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Clc01G05480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G05480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationClcChr01:5082169..5082869
RNA-Seq ExpressionClc01G05480
SyntenyClc01G05480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605668.1 hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3568.97Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQS--
        +E+AAEA SSTLFIFC FNLI+LIILFTS+PVSSSS  D QN  D+PLSIVIHSNTN  +QNFMLQK+  VDVC VTE  NEP+      F+D+VE S  
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQS--

Query:  ---DDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQITLRSVE
           D+D+DEDE EDE+DF+RRVEEFIEKVN GWREERQ T R VE
Subjt:  ---DDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQITLRSVE

QHO42419.1 uncharacterized protein DS421_5g153990 [Arachis hypogaea]1.2e-0937.97Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDP---TVDVCEVTEIQNEPERSMKFN-------
        +E   +A SS+ FIFCF N II+ IL   KP + SSS  Q+N    P S+  +  T  T   F++QKD     + V  V +++ E E  +K         
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDP---TVDVCEVTEIQNEPERSMKFN-------

Query:  --------FNDNVEQSD-----DDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT
                F + V++ D     ++++E+E+EDED+ R+RVEEFIEKVN+GW+EE  IT
Subjt:  --------FNDNVEQSD-----DDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT

XP_020958837.1 uncharacterized protein LOC110262661 [Arachis ipaensis]1.6e-0937.25Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDP---TVDVCEVTEIQNEPERSMKFNFNDNV--
        +E   +A SS+ FIFCF NLII+ IL   KP  SSS   QQ + ++  S+  +     T   F++QKD     + V  V +++ E E   K    D +  
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDP---TVDVCEVTEIQNEPERSMKFNFNDNV--

Query:  -------------EQSDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT
                     E  +++++E E+ED+D+ R+RVEEFIEKVN+GW+EE  IT
Subjt:  -------------EQSDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT

XP_024928006.1 uncharacterized protein LOC112491100 [Ziziphus jujuba]1.4e-1041.73Show/hide
Query:  EVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDD
        ++  +  S++LF+FCF NLII+IIL  SK   S ++FDQ+N   +PLS+    +T+         +  T+D  +V E  +E   + K   N NV  ++ +
Subjt:  EVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDD

Query:  QDEDED-EDEDDFRRRVEEFIEKVNRGWREERQITLRSV
         DE+E+ ED+D+ RRRVEEFIEKVNRGW+ E  IT + V
Subjt:  QDEDED-EDEDDFRRRVEEFIEKVNRGWREERQITLRSV

XP_031742158.1 probable ATP-dependent RNA helicase ddx52 [Cucumis sativus]9.1e-4273.61Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQN-DYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSD
        +E+AA+A SSTLFIFCFFNLIIL+I FTS+P  ++SSFDQQN D DMPLSIVIHS TNTTEQN MLQKDP V VCEV E QNE ER + FN N +VEQSD
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQN-DYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSD

Query:  DDQD---EDEDEDEDDFRRRVEEFIEKVNRGWREERQITLRSVE
        DD +   EDEDEDEDDFR+RVEEFIEKVNRGWREER  T   V+
Subjt:  DDQD---EDEDEDEDDFRRRVEEFIEKVNRGWREERQITLRSVE

TrEMBL top hitse value%identityAlignment
A0A2N9GM45 Uncharacterized protein4.4e-1042.65Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTN-----TTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNV
        +E+  +A S++LFIFCF NLII I+L  SK   SSS F QQ   ++PLS+VI+++TN       +Q F   K        +    +E   S +    D  
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTN-----TTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNV

Query:  EQSDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREE
        E  +++  +DEDED+D+ RRRVEEFIEKVN+GW+ E
Subjt:  EQSDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREE

A0A5N6RPH7 Uncharacterized protein9.9e-1038.81Show/hide
Query:  EVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTN----TTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQ
        E+  +A S+ LFIFCF NLII I+L  SKP S        +  ++P+S+VI++ TN       +     K+   +V +V+  Q  P    +   N N   
Subjt:  EVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTN----TTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQ

Query:  SDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREE
         ++D+D+D+D+D+D+ RR+VEEFIEKVN+GW+ E
Subjt:  SDDDQDEDEDEDEDDFRRRVEEFIEKVNRGWREE

A0A6A1VDN9 Uncharacterized protein1.1e-0841.55Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQ-SD
        +E+  +A S+++FIFCF NLII+ IL  SK   SSS  DQ+   ++PLS+   +N  +T+      ++  +D  E +   NE   S +    DN E  S 
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQ-SD

Query:  DDQDEDED--EDEDDFRRRVEEFIEKVNRGWREERQITLRSV
        D++D+D+D   D D+ RRRVEEFIEKVN+GWR E   + R V
Subjt:  DDQDEDED--EDEDDFRRRVEEFIEKVNRGWREERQITLRSV

A0A6P5NPZ6 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like8.4e-0937.11Show/hide
Query:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDP---TVDVCEVTEIQNEPERSMKFN-------
        +E   +A SS+ FIFCF NLII+ IL   KP + SSS  Q+N    P S+  +  T  T   F++QKD     + V  V + + E E  ++         
Subjt:  MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDP---TVDVCEVTEIQNEPERSMKFN-------

Query:  ------------FNDNVEQSD--DDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT
                    F + V++ D  ++++E E+ED+D+ R+RVEEFIEKVN+GW+EE  IT
Subjt:  ------------FNDNVEQSD--DDQDEDEDEDEDDFRRRVEEFIEKVNRGWREERQIT

A0A6P6G1P3 uncharacterized protein LOC1124911006.9e-1141.73Show/hide
Query:  EVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDD
        ++  +  S++LF+FCF NLII+IIL  SK   S ++FDQ+N   +PLS+    +T+         +  T+D  +V E  +E   + K   N NV  ++ +
Subjt:  EVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDD

Query:  QDEDED-EDEDDFRRRVEEFIEKVNRGWREERQITLRSV
         DE+E+ ED+D+ RRRVEEFIEKVNRGW+ E  IT + V
Subjt:  QDEDED-EDEDDFRRRVEEFIEKVNRGWREERQITLRSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAG
TTTTGATCAACAAAATGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAACAGAACAAAATTTCATGCTTCAGAAGGATCCCACAGTTGATGTGT
GTGAAGTGACAGAGATTCAAAATGAACCGGAGAGAAGCATGAAGTTCAACTTCAATGATAATGTTGAACAGAGTGATGATGATCAGGATGAGGATGAGGATGAGGATGAA
GATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGGCAAATAACCTTGAGATCGGTCGAATAG
mRNA sequenceShow/hide mRNA sequence
AAACCTTCACATTTCCCATTCATTCTTCTCTCTTCAATTCCATTATGGAAGTTGCTGCTGAGGCAGATTCCAGCACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATA
CTCATCATTCTCTTCACCTCAAAACCAGTCTCCTCCTCCTCCAGTTTTGATCAACAAAATGATTATGATATGCCACTTTCAATTGTCATTCACAGCAACACAAATACAAC
AGAACAAAATTTCATGCTTCAGAAGGATCCCACAGTTGATGTGTGTGAAGTGACAGAGATTCAAAATGAACCGGAGAGAAGCATGAAGTTCAACTTCAATGATAATGTTG
AACAGAGTGATGATGATCAGGATGAGGATGAGGATGAGGATGAAGATGATTTCAGACGAAGAGTGGAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGG
CAAATAACCTTGAGATCGGTCGAATAGTTGGGCCAGCTCCAACCCGATTGATTTTTGTTCCAAGATACTTCATTCTAGCTAAACAAGACCCTCCATCACTTTTATCTGGG
GGTTGAGCTCTGTATCTCTTTCGGAAACATGTACGTTACCCAATGTATGAATATCAGAATTTTGAAGAAGATAAATATAGAAGCATAAGAATGAAGTAGATTCAATTAGA
ACAGTTTCACAAAGATGAAATTTTCTACTGTTTGATTCAAG
Protein sequenceShow/hide protein sequence
MEVAAEADSSTLFIFCFFNLIILIILFTSKPVSSSSSFDQQNDYDMPLSIVIHSNTNTTEQNFMLQKDPTVDVCEVTEIQNEPERSMKFNFNDNVEQSDDDQDEDEDEDE
DDFRRRVEEFIEKVNRGWREERQITLRSVE