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Clc01G05720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G05720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionYcf20-like protein isoform X1
Genome locationClcChr01:5402600..5405050
RNA-Seq ExpressionClc01G05720
SyntenyClc01G05720
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007572 - Uncharacterised protein family Ycf20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579671.1 hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia]7.1e-6790.78Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
        V TGLLNY FTP+ N SYWRYDM+KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA

Query:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYG+++
Subjt:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

KAG7017120.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-7289.47Show/hide
Query:  HSQSRTWNRFQVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLS
        HSQS TWNR  V TGLLNY FTP+ N SYWRYDM+KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLS
Subjt:  HSQSRTWNRFQVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLS

Query:  FGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        FGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYG+++
Subjt:  FGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

XP_004143642.1 uncharacterized protein ycf20 [Cucumis sativus]1.2e-6995.07Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        VHT LLNYGFTPKMNPSYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYG+++
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

XP_008467245.1 PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]8.4e-6893.66Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        VHTGLLNYGF+ KMN SYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYG+++
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

XP_022969949.1 uncharacterized protein ycf20 [Cucurbita maxima]9.3e-6790.78Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
        V TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA

Query:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYG+++
Subjt:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

TrEMBL top hitse value%identityAlignment
A0A0A0KPS1 Uncharacterized protein5.7e-7095.07Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        VHT LLNYGFTPKMNPSYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYG+++
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

A0A1S3CT33 uncharacterized protein ycf20 isoform X14.1e-6893.66Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        VHTGLLNYGF+ KMN SYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYG+++
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

A0A5D3BMH1 Ycf20-like protein isoform X14.4e-6295.35Show/hide
Query:  MNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
        MNPSYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Subjt:  MNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT

Query:  RFYYSRPKVTFPIALLNNFKMGFTYGIYV
        RFYYSRPKVTFPIALLNNFKMGFTYG+++
Subjt:  RFYYSRPKVTFPIALLNNFKMGFTYGIYV

A0A6J1ESY7 uncharacterized protein ycf205.9e-6790.78Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
        V TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA

Query:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYG+++
Subjt:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

A0A6J1I440 uncharacterized protein ycf204.5e-6790.78Show/hide
Query:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
        V TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA
Subjt:  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA

Query:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV
        AVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYG+++
Subjt:  AVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV

SwissProt top hitse value%identityAlignment
P51214 Uncharacterized protein ycf204.0e-0442.25Show/hide
Query:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNNFKMGFTYGIYV
        G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN K+G TYG++V
Subjt:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNNFKMGFTYGIYV

Q1XDS2 Uncharacterized protein ycf202.8e-0537.78Show/hide
Query:  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPIALLNNFKMGFTYGIYV
        L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   I L NNFK+G TYG++V
Subjt:  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPIALLNNFKMGFTYGIYV

Arabidopsis top hitse value%identityAlignment
AT5G43050.1 Protein of unknown function (DUF565)1.9e-4683.49Show/hide
Query:  IKAVQDTGG--PRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK
        I+A+Q+T G  PRRL+DIIR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTRFYYSR  VTFPIALLNNFK
Subjt:  IKAVQDTGG--PRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK

Query:  MGFTYGIYV
        MGFTYG+++
Subjt:  MGFTYGIYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACAATTTCTCGCAAGTACAAGTTCTCTTACATTTTCTAATCTCAATTTCCAAATTCGTGATTCCCTTTGCTCCGTAAGAAGCACTGCTCTTGCTCCTCACTCCCA
AAGCAGAACCTGGAATCGATTTCAAGTACATACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCAT
CCCCTCGTAGTGTTCGTATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCT
TCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGT
GGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGCA
TATATGTTCTGATCGACCAAGAGACCGGAGATGCGAATCCTCCAACCCCTGATGTCGTTGAACTCAAACTTCTACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACAATTTCTCGCAAGTACAAGTTCTCTTACATTTTCTAATCTCAATTTCCAAATTCGTGATTCCCTTTGCTCCGTAAGAAGCACTGCTCTTGCTCCTCACTCCCA
AAGCAGAACCTGGAATCGATTTCAAGTACATACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCAT
CCCCTCGTAGTGTTCGTATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCT
TCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGT
GGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGCA
TATATGTTCTGATCGACCAAGAGACCGGAGATGCGAATCCTCCAACCCCTGATGTCGTTGAACTCAAACTTCTACCCTAATAGTATTCCTTCCTAACGGTCTTTATCCCT
TTCAAAGATTGTACAAGGGATAAAAATTTGGGTGTTGGCCATGAATACAAGGAGGCAAATTCTGAAATATTTAGCAGCATTAATCTTCATTAGCATTAATCTTCATTACT
AATGATTAAAGTAC
Protein sequenceShow/hide protein sequence
MKQFLASTSSLTFSNLNFQIRDSLCSVRSTALAPHSQSRTWNRFQVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSP
SRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYVLIDQETGDANPPTPDVVELKLLP