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Clc01G05785 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G05785
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Genome locationClcChr01:5439609..5445302
RNA-Seq ExpressionClc01G05785
SyntenyClc01G05785
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1202527.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Morella rubra]1.0e-0876.09Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        PSSTTTPSRYENQK +D NTF Q L+NH+PPL+L M S AHVLEFL
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

KAE8725816.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Hibiscus syriacus]2.3e-0872.34Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLV
        P STTTPSRYENQK +D NTF Q L+NHRPPL+L M S+ HVLEFL+
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLV

XP_022946684.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata]2.7e-0982.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

XP_022999096.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]2.7e-0982.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

XP_023546935.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]2.7e-0982.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

TrEMBL top hitse value%identityAlignment
A0A5D3BFP5 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like1.1e-0849.41Show/hide
Query:  SKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        S+  SN+ NP++  T                P        +S TTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Subjt:  SKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

A0A6A1URV5 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 15.0e-0976.09Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        PSSTTTPSRYENQK +D NTF Q L+NH+PPL+L M S AHVLEFL
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

A0A6A3CAP5 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 21.1e-0872.34Show/hide
Query:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLV
        P STTTPSRYENQK +D NTF Q L+NHRPPL+L M S+ HVLEFL+
Subjt:  PSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLV

A0A6J1G4J5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like1.3e-0982.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

A0A6J1KC51 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like1.3e-0982.22Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SSTTTPSRYENQK +D NTF Q L+NHRPPLALQM S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

SwissProt top hitse value%identityAlignment
B8AH02 Protein G1-like32.6e-0770.73Show/hide
Query:  TPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        TPSRYE QK +D NTF Q L+NHRPPL L   S AHVLEFL
Subjt:  TPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

Q6NNI3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 14.1e-0861.11Show/hide
Query:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        P+   QL P S+   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Subjt:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

Q9FGH2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 55.3e-0864.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SS+++PSRYE+QK +D NTF Q L+NH+PPL L   S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

Q9LMK2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 65.3e-0864.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        S   TPSRYE+QK +D NTF Q L+NH+PPLAL   S AHV+EFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

Q9LW68 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 41.5e-0766.67Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        S T   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

Arabidopsis top hitse value%identityAlignment
AT1G07090.1 Protein of unknown function (DUF640)3.8e-0964.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        S   TPSRYE+QK +D NTF Q L+NH+PPLAL   S AHV+EFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

AT2G31160.1 Protein of unknown function (DUF640)1.9e-0864.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        S +   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

AT3G23290.2 Protein of unknown function (DUF640)1.1e-0866.67Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        S T   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

AT5G28490.1 Protein of unknown function (DUF640)2.9e-0961.11Show/hide
Query:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        P+   QL P S+   SRYENQK +D NTF Q L+NHRPPL+L   S AHVLEFL
Subjt:  PHQRRQLFPSSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL

AT5G58500.1 Protein of unknown function (DUF640)3.8e-0964.44Show/hide
Query:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL
        SS+++PSRYE+QK +D NTF Q L+NH+PPL L   S AHVLEFL
Subjt:  SSTTTPSRYENQKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGGAAGGTCCAAATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAAAATTAGACCATCCCTCTCAGGGTTTAAAAGATTCACCATCATTCTACCGGATTC
TTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCAAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAATCCTTCTAGCCTTAACA
CAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGCGTCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGGTACGAGAAC
CAAAAATGGAAAGATTCGAACACGTTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCACGTGCTGGAATTTCTGGTTACTCA
GTGGCAGATATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGGCTCGAACCCCATTTTGGGAATGTTCCTTCAGCACGGCTATTTTTCGCAATATTACTG
CTCTTACTACGGACGCCGGTGGGGGATGTGGAGGGGAAAACGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGAGACAACCGAAAAAGGTTGGTTGCGGTGAACGAA
CAATGGGAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGGAAGGTCCAAATCTCAAGTTAATCCTCAAAGCGGTTGGGATCCTCAAAATTAGACCATCCCTCTCAGGGTTTAAAAGATTCACCATCATTCTACCGGATTC
TTCAATCAAGATCAGGAAAAGTATTCCCTGCCTTTCTTCCCAAAAATGCCCCTTGTCTCCAATAGATTCAAAAGATGATTCAAACTCAGCAAATCCTTCTAGCCTTAACA
CAATAGTGGAAGTTTGTGGGATCCAATTGGGTCAAGTTTCTTGTCAATTGCCTCATCAGCGTCGCCAGTTGTTTCCGTCGTCCACCACCACCCCAAGCCGGTACGAGAAC
CAAAAATGGAAAGATTCGAACACGTTCTATCAAAACCTTCAGAACCACCGGCCACCATTGGCTCTGCAGATGTACAGCAGCGCTCACGTGCTGGAATTTCTGGTTACTCA
GTGGCAGATATCCAGAGTCATTCACTTGAGTGGCTCTAATGCTCAAGTTCCGGCTCGAACCCCATTTTGGGAATGTTCCTTCAGCACGGCTATTTTTCGCAATATTACTG
CTCTTACTACGGACGCCGGTGGGGGATGTGGAGGGGAAAACGGCGGTGCAAACACAGGTGGAAGTGATTTGGCGGGAGACAACCGAAAAAGGTTGGTTGCGGTGAACGAA
CAATGGGAGAACCCGACGGAACGCGACATGAGGAACCTTAATCATCATCATCAAAGTCTTAGCCGCAGCTGA
Protein sequenceShow/hide protein sequence
MSGEGPNLKLILKAVGILKIRPSLSGFKRFTIILPDSSIKIRKSIPCLSSQKCPLSPIDSKDDSNSANPSSLNTIVEVCGIQLGQVSCQLPHQRRQLFPSSTTTPSRYEN
QKWKDSNTFYQNLQNHRPPLALQMYSSAHVLEFLVTQWQISRVIHLSGSNAQVPARTPFWECSFSTAIFRNITALTTDAGGGCGGENGGANTGGSDLAGDNRKRLVAVNE
QWENPTERDMRNLNHHHQSLSRS