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Clc01G05810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G05810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA polymerase delta subunit 4
Genome locationClcChr01:5479808..5481303
RNA-Seq ExpressionClc01G05810
SyntenyClc01G05810
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4881.1Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MASARGG+KDFYKQRKNSG+    SK SKPSSRKTKS ANSA+L SDAVQPAAL+SHGS DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KL
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPK+IE+LLK G VQLECLW SR+
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]5.0e-5590.55Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL+SHGS DLQDDYG SEN LRQFDMN AYGPCLGMTRMARWERAC L
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPKDI TLLKAG VQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]1.0e-5591.34Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC L
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPKDI TLLKAG VQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]1.6e-4881.1Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MASARGG+KDFYKQRKNSG+    SK SKPSSRKTKS ANSA+L SD VQPAAL+SHGS DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KL
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPK+IETLLK G VQLECLW SR+
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]5.7e-5994.49Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MASARGGLKDFYKQRKNSGISKANSKASKPSSRK KSPANSASLGSDAVQPAAL+SHGS DLQDDYGA ENMLRQFDMNMAYGPCLGMTRMARWERAC L
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPKDIETLLKA  VQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein2.4e-5590.55Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL+SHGS DLQDDYG SEN LRQFDMN AYGPCLGMTRMARWERAC L
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPKDI TLLKAG VQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 44.9e-5691.34Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC L
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPKDI TLLKAG VQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 44.9e-5691.34Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC L
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPKDI TLLKAG VQLECLWDSRV
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591437.5e-4981.1Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MASARGG+KDFYKQRKNSG+    SK SKPSSRKTKS ANSA+L SD VQPAAL+SHGS DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KL
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPK+IETLLK G VQLECLW SR+
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911821.8e-4779.53Show/hide
Query:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL
        MASARGG+KDFYKQRKNSG+    SK SKPSS KTKS A+SA+L SD VQPAAL+SHGS DL+DDYG SEN+LRQFDMNMAYGPCLGMTRM RWE A KL
Subjt:  MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKL

Query:  GLNPPKDIETLLKAGNVQLECLWDSRV
        GLNPPK+IETLLK G VQLECLW SR+
Subjt:  GLNPPKDIETLLKAGNVQLECLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 41.7e-0551.16Show/hide
Query:  ENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLL
        E +L  FD    YGP LGMTRM RW+RA    LNPP+ +  +L
Subjt:  ENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 43.6e-0845.45Show/hide
Query:  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLEC-LW
        +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +L++  G+ + +C LW
Subjt:  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 41.4e-0753.49Show/hide
Query:  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA
        +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +LKA
Subjt:  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 41.6e-0843.75Show/hide
Query:  QDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLEC-LW
        +D+  A   +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +LK   G+ + +C LW
Subjt:  QDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 41.9e-3660.77Show/hide
Query:  MASARGGLKDFYKQRKNS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERA
        MA+    LK FYKQ K++   GISK     SKPSSRK  +P ++A+ GSD  QPAAL+SHGS DL +DY   E MLRQFDMN+ YGPCLGMTR+ RWERA
Subjt:  MASARGGLKDFYKQRKNS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERA

Query:  CKLGLNPPKDIETLLKAGNVQLECLWDSRV
         +LG+NPP +IE LLK G VQ +CLW  RV
Subjt:  CKLGLNPPKDIETLLKAGNVQLECLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGATGATTATGGAGCGTCTGAGAATATGCTGA
GGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACA
CTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGATGATTATGGAGCGTCTGAGAATATGCTGA
GGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACA
CTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA
Protein sequenceShow/hide protein sequence
MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIET
LLKAGNVQLECLWDSRV