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Clc01G06280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:6106087..6106553
RNA-Seq ExpressionClc01G06280
SyntenyClc01G06280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579224.1 hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sororia]6.9e-5080.92Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP
        MDII+TPSA SL+RLWRRRRYQRLGSG  G  RSRSFRLGR+WRMRR+ APKLRLK +SPLKVLA+ HD YV+MM R+AN+VGNMYAIG FGN KRIPKP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKN
        +NQ+ LVSCGGEQVDAKLVLEIYNKLA SKN
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKN

KAG7016737.1 hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5081.68Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP
        MDII+TPSA SL+RLWRRRRYQRLGSG TG  RSRSFRLGR+WRMRR+ APKLRLK +SPLKVLA+ HD YV+MM R+AN+VGNMYAIG FGN KRIPKP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKN
        +NQ+ LVSCGGEQVDAKLVLEIYNKLA SKN
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKN

XP_022939174.1 uncharacterized protein LOC111445168 [Cucurbita moschata]5.9e-4977.94Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP
        MDII+TPSA SL+RLWRRRRYQRLGSG TG  RSRSF LGR+WRMRR+ APKLRLK + P K LA+ HD YV+MM R+AN VGNMYAIG FGN KRIPKP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA
        +NQV LVSCGGEQVDAKLVLE+YNKLAASKN S  A
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA

XP_022993314.1 uncharacterized protein LOC111489358 [Cucurbita maxima]5.9e-4977.94Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP
        MDII+TPSA SL+RLWRRRRYQRLGSG TG  RSRSFRLGR+WR+RR+ APKLRLK  SP K LA+ HD YV+MMMR+ANSVG+MYAIG +GN KRIPKP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA
         NQV LVSCGGEQVD KLVLE+YNKLAASKN S  A
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA

XP_038874956.1 uncharacterized protein LOC120067468 [Benincasa hispida]3.4e-5786.96Show/hide
Query:  IISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKPKN
        I++T SAQSLRRLWRR+RYQRLGS STGPTRSRSFR+G   RMRR+VAPK RLK SSPLKVLAKIHD YV+MMMR ANSVGNMYAIGAFGNRKRIPKP+N
Subjt:  IISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKPKN

Query:  QVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTAAPNF
        QVPLVSC GEQVDAKLVLEIYNKLAASKNNSTTAA NF
Subjt:  QVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTAAPNF

TrEMBL top hitse value%identityAlignment
A0A0A0KV01 Uncharacterized protein6.3e-4980.29Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSG---STGPTR-SRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKR
        MDII+T SAQ+LRRLWRRR YQRLGSG   ST  TR SRSFR+GR+  MRR+V+PK+RLK SSPLKV+AKIHD YVEMMMRLANSVGNMYAIG FGNRKR
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSG---STGPTR-SRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKR

Query:  IPKPKNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNS
        IPKP+NQVPL   GGEQ+DAKLVLEIYNKLAASKN+S
Subjt:  IPKPKNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNS

A0A1S3CSX3 uncharacterized protein LOC1035045912.4e-4880.15Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGS--TGPTRS-RSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRI
        MDII+T SAQ+LRRLWRRR YQRL SGS  T PTRS RSFR+GR+  MRR+ +PKLRLK SSPLKV+AKIHD YVEMMMRLANSVGNMYAIG FGNRKRI
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGS--TGPTRS-RSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRI

Query:  PKPKNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNS
        PKP+NQVPL   GGEQ+DAKLVLEIYNKLA+SKN+S
Subjt:  PKPKNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNS

A0A5D3BKB9 Uncharacterized protein1.8e-4880.74Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGS-TGPTRS-RSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIP
        MDII+T SAQ+LRRLWRRR YQRL SGS T PTRS RSFR+GR+  MRR+ +PKLRLK SSPLKV+AKIHD YVEMMMRLANSVGNMYAIG FGNRKRIP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGS-TGPTRS-RSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIP

Query:  KPKNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNS
        KP+NQVPL   GGEQ+DAKLVLEIYNKLA+SKN+S
Subjt:  KPKNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNS

A0A6J1FGC7 uncharacterized protein LOC1114451682.8e-4977.94Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP
        MDII+TPSA SL+RLWRRRRYQRLGSG TG  RSRSF LGR+WRMRR+ APKLRLK + P K LA+ HD YV+MM R+AN VGNMYAIG FGN KRIPKP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA
        +NQV LVSCGGEQVDAKLVLE+YNKLAASKN S  A
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA

A0A6J1JZV2 uncharacterized protein LOC1114893582.8e-4977.94Show/hide
Query:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP
        MDII+TPSA SL+RLWRRRRYQRLGSG TG  RSRSFRLGR+WR+RR+ APKLRLK  SP K LA+ HD YV+MMMR+ANSVG+MYAIG +GN KRIPKP
Subjt:  MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA
         NQV LVSCGGEQVD KLVLE+YNKLAASKN S  A
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNNSTTA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47485.1 unknown protein8.3e-0935.61Show/hide
Query:  RLWRR-RRYQRL-GSGSTGPTRSRSF--------RLGRVWRMRRQVAPKLR-LKASSPLKVLAKIHDGYVEMMMRLANS--VGNMYAIGAFGNRKRIPKP
        R WRR R YQRL GS     +  R+         R  R WR++  + PKLR LK +SP K+L  + D YV MM+RLANS  VG+ Y  G +G    +   
Subjt:  RLWRR-RRYQRL-GSGSTGPTRSRSF--------RLGRVWRMRRQVAPKLR-LKASSPLKVLAKIHDGYVEMMMRLANS--VGNMYAIGAFGNRKRIPKP

Query:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNN
                   ++ D K ++EIY  +  ++ N
Subjt:  KNQVPLVSCGGEQVDAKLVLEIYNKLAASKNN

AT3G62650.1 unknown protein3.5e-0736.22Show/hide
Query:  RRLWRR-RRYQRL-GSGSTGPTRSRSFRL-------GRVWRMRRQVAPKLR-LKASSPLKVLAKIHDGYVEMMMRLANS--VGNM-YAIGAFGNRKRIPK
        +R WRR R Y++L GS  T   R +  R+        R WR++  + PKLR LK +SP K L  + D YV+MMMRLANS  VG+  Y    FG+ +    
Subjt:  RRLWRR-RRYQRL-GSGSTGPTRSRSFRL-------GRVWRMRRQVAPKLR-LKASSPLKVLAKIHDGYVEMMMRLANS--VGNM-YAIGAFGNRKRIPK

Query:  PKNQVPLVSCGGEQVDAKLVLEIYNKL
                    ++ D K+++EIY  +
Subjt:  PKNQVPLVSCGGEQVDAKLVLEIYNKL

AT3G62650.2 unknown protein3.5e-0736.22Show/hide
Query:  RRLWRR-RRYQRL-GSGSTGPTRSRSFRL-------GRVWRMRRQVAPKLR-LKASSPLKVLAKIHDGYVEMMMRLANS--VGNM-YAIGAFGNRKRIPK
        +R WRR R Y++L GS  T   R +  R+        R WR++  + PKLR LK +SP K L  + D YV+MMMRLANS  VG+  Y    FG+ +    
Subjt:  RRLWRR-RRYQRL-GSGSTGPTRSRSFRL-------GRVWRMRRQVAPKLR-LKASSPLKVLAKIHDGYVEMMMRLANS--VGNM-YAIGAFGNRKRIPK

Query:  PKNQVPLVSCGGEQVDAKLVLEIYNKL
                    ++ D K+++EIY  +
Subjt:  PKNQVPLVSCGGEQVDAKLVLEIYNKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTATTTCAACCCCATCAGCTCAAAGCTTGAGAAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTGGTAGTACTGGTCCCACAAGATCAAGGAGCTT
TCGGCTCGGTCGGGTGTGGCGGATGAGACGACAAGTAGCTCCGAAACTACGGTTGAAAGCGTCGTCGCCGTTGAAAGTTCTAGCGAAGATTCACGACGGGTATGTCGAAA
TGATGATGAGGTTGGCCAACAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGAAATAGGAAGAGGATACCTAAACCTAAAAATCAAGTTCCTCTTGTTTCTTGTGGT
GGGGAACAAGTTGATGCTAAATTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACAACTCAACTACTGCTGCTCCTAATTTTTGA
mRNA sequenceShow/hide mRNA sequence
CCTCTATCTCTTTCCCTTATATTAGAAAACCTCTCTTATCAAAAATGGATATTATTTCAACCCCATCAGCTCAAAGCTTGAGAAGGCTATGGAGAAGAAGAAGATACCAA
AGGCTAGGAAGTGGTAGTACTGGTCCCACAAGATCAAGGAGCTTTCGGCTCGGTCGGGTGTGGCGGATGAGACGACAAGTAGCTCCGAAACTACGGTTGAAAGCGTCGTC
GCCGTTGAAAGTTCTAGCGAAGATTCACGACGGGTATGTCGAAATGATGATGAGGTTGGCCAACAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGAAATAGGAAGA
GGATACCTAAACCTAAAAATCAAGTTCCTCTTGTTTCTTGTGGTGGGGAACAAGTTGATGCTAAATTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACAAC
TCAACTACTGCTGCTCCTAATTTTTGA
Protein sequenceShow/hide protein sequence
MDIISTPSAQSLRRLWRRRRYQRLGSGSTGPTRSRSFRLGRVWRMRRQVAPKLRLKASSPLKVLAKIHDGYVEMMMRLANSVGNMYAIGAFGNRKRIPKPKNQVPLVSCG
GEQVDAKLVLEIYNKLAASKNNSTTAAPNF