; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G06490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit
Genome locationClcChr01:6429224..6430074
RNA-Seq ExpressionClc01G06490
SyntenyClc01G06490
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046315.1 uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa]2.0e-5072.96Show/hide
Query:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        MKSINS++FS  S      L  P P  H  R+   AVT+RAS   +ADNNNN       YYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        YYS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSSALLLHRFF IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

XP_022939420.1 uncharacterized protein LOC111445338 [Cucurbita moschata]3.2e-4874.83Show/hide
Query:  SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEA
        SISS NSA FL   P  S  R RR P   T+ ASSR   S++ NNNNYYASGK+VDESMIVLRKRIHEIKM E+SH+PP+DW DWEKR YS+YDSHICEA
Subjt:  SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEA

Query:  LGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        LGYLQSHLMNTRPSVALG+LL+I LSVPLSSA++LHRF  IAAALLA
Subjt:  LGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

XP_022989988.1 uncharacterized protein LOC111487016 [Cucurbita maxima]4.2e-4871.43Show/hide
Query:  MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY
        M SINS+  SI ST+SA  L PP +PS HR RR P A T+ ASSR     ++N+YYA GK+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNY
Subjt:  MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        DS+ICEALGYLQSHLMNTRPSVALGML ++ LSVP+SSA++LHRF +IA  LLA
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

XP_022993164.1 uncharacterized protein LOC111489262 [Cucurbita maxima]1.4e-4874.5Show/hide
Query:  SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC
        SISS NSA FL   P +PS  R RRLP+   I +S    S SS +NNNNYYASGK+VDESMIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHIC
Subjt:  SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC

Query:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        EALGYLQSHLMNTRPSV+LG+LL+I LSVPLSSA++LHRF  IAAALLA
Subjt:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

XP_038875502.1 uncharacterized protein LOC120067929 [Benincasa hispida]4.3e-6186.27Show/hide
Query:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYD
        MKSINS+  SISSTNSA FL P T S HR RRLP+AVT+ ASSRSSAD NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSH+PPADW DWEKRYYS+YD
Subjt:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        SHICEALGYLQ+HLMNTRPSVALGMLL+I LSVP SSA+LLHRFFQIAAALLA
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

TrEMBL top hitse value%identityAlignment
A0A0A0KPI5 Uncharacterized protein4.5e-4870.44Show/hide
Query:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-------NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        M+SINS++FS  S      L  P    H  R+   AVT+RAS   +AD       NNNNYYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-------NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        +YS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSSALLLHRF  IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

A0A5A7TY46 Uncharacterized protein9.7e-5172.96Show/hide
Query:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR
        MKSINS++FS  S      L  P P  H  R+   AVT+RAS   +ADNNNN       YYA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR
Subjt:  MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------YYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKR

Query:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        YYS+YDSHICEALGYLQSHLMNTRPSVALGMLL+II+SVPLSSALLLHRFF IA ALLA
Subjt:  YYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

A0A6J1FMN3 uncharacterized protein LOC1114453381.6e-4874.83Show/hide
Query:  SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEA
        SISS NSA FL   P  S  R RR P   T+ ASSR   S++ NNNNYYASGK+VDESMIVLRKRIHEIKM E+SH+PP+DW DWEKR YS+YDSHICEA
Subjt:  SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEA

Query:  LGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        LGYLQSHLMNTRPSVALG+LL+I LSVPLSSA++LHRF  IAAALLA
Subjt:  LGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

A0A6J1JRY7 uncharacterized protein LOC1114870162.0e-4871.43Show/hide
Query:  MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY
        M SINS+  SI ST+SA  L PP +PS HR RR P A T+ ASSR     ++N+YYA GK+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNY
Subjt:  MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        DS+ICEALGYLQSHLMNTRPSVALGML ++ LSVP+SSA++LHRF +IA  LLA
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

A0A6J1JZG1 uncharacterized protein LOC1114892627.0e-4974.5Show/hide
Query:  SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC
        SISS NSA FL   P +PS  R RRLP+   I +S    S SS +NNNNYYASGK+VDESMIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHIC
Subjt:  SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHIC

Query:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA
        EALGYLQSHLMNTRPSV+LG+LL+I LSVPLSSA++LHRF  IAAALLA
Subjt:  EALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15010.1 unknown protein2.8e-2648.78Show/hide
Query:  IRASSRSSADNNN--------NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIIL
        +R S R +   N         +YY  G+ VDE+M+VLRKRIHE+KM E++ +PP+ W  WEKR+Y NYD+ IC+AL  LQ+ LMN+RPSVA G  L++++
Subjt:  IRASSRSSADNNN--------NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIIL

Query:  SVPLSSALLLHRFFQIAAALLAA
        SVP+SSA+   R   +A  LL A
Subjt:  SVPLSSALLLHRFFQIAAALLAA

AT2G01300.1 unknown protein6.1e-2951.69Show/hide
Query:  VTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSS
        +T+R S+ +S+   ++YY  G++VDE+MIVLRKRIHE+KM E++++PP+ W DWEKR+Y++YDS IC+++G LQS LMN+RP+VA+  LL +++SVP+SS
Subjt:  VTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSS

Query:  ALLLHRFFQIAAALLAAA
         ++  R   +   LLAAA
Subjt:  ALLLHRFFQIAAALLAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGT
AACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGA
TCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAA
TCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGC
CGCCGCGCTTCTCGCCGCCGCTTAA
mRNA sequenceShow/hide mRNA sequence
CAGTTGCCTCTTCCATTAAGTTAACTCCCACTTGCCCAAAAAAATAAAAATAAAATAATATCCTATAAATACCCAATCAAAATTCCATAAATTTCCCCAAATTCAAAACT
CAAAAAAATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAG
TGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATC
CACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTA
TCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCC
AAATCGCCGCCGCGCTTCTCGCCGCCGCTTAACATCGGAACCACCACAGTCAGTTACGTTAAACGATACACAACACAATTGAATACGCCGTCGTTTTGATTATGTAATTT
TTTATTTATGTAGGGATTAGTTGGTCTTTGTACAGCTTACATCTCATTGTTTGTTTCGCTTTCTGTTATTTTATTTAAACGGTCGAGTTTTTTATTCTATTTAAATGATT
TTTATATATATTACGACTTTCCTCTTTTTTCCTCTCCTTTTTTCTTTATCTTTCCTTTTTTGAATTCTTTATCCTTTTTGC
Protein sequenceShow/hide protein sequence
MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQ
SHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLAAA