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Clc01G06545 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06545
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:6483580..6483958
RNA-Seq ExpressionClc01G06545
SyntenyClc01G06545
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031741057.1 B3 domain-containing protein At2g31420-like [Cucumis sativus]3.7e-0468.57Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL
        KWN  VEE+GLKSG  +Q+WSF+KDDE EA  LCL
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL

XP_038874960.1 B3 domain-containing protein At2g31420-like [Benincasa hispida]3.1e-0669.44Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCLV
        +WN F EEKGLKSG H+Q+W F++DDEFEAS LC V
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCLV

XP_038874962.1 putative B3 domain-containing protein At5g35780 [Benincasa hispida]4.4e-0567.65Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC
        +WN F EE GLKSG H+Q+W F++DDEFEAS LC
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC

XP_038876237.1 putative B3 domain-containing protein At3g24850 [Benincasa hispida]5.2e-0673.53Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC
        +WN FVEE GLKSG H+Q+W F+KDDEFEAS LC
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC

XP_038905532.1 putative B3 domain-containing protein At3g24850 [Benincasa hispida]1.7e-0462.86Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL
        +WN  VEE GLKSG H+Q+WSF+KDDE+E   +CL
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL

TrEMBL top hitse value%identityAlignment
A0A0A0KP87 Uncharacterized protein1.8e-0468.57Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL
        KWN  VEE+GLKSG  +Q+WSF+KDDE EA  LCL
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL

A0A0A0KPD7 Uncharacterized protein1.8e-0468.57Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL
        KWN  VEE+GLKSG  +Q+WSF+KDDE EA  LCL
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCL

A0A1S3CSS4 putative B3 domain-containing protein At3g248503.1e-0467.65Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC
        +WN FVEE GLKSG H+QLW F+KD EFE   LC
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC

A0A5D3CT22 Putative B3 domain-containing protein3.1e-0467.65Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC
        +WN FVEE GLKSG H+QLW F+KD EFE   LC
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC

A0A5D3E3Y5 Putative B3 domain-containing protein4.0e-0464.71Show/hide
Query:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC
        KWN  VE++G KSG  +QLWSF+KDDE+EA  LC
Subjt:  KWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATGCCTAAATGGTGGTGTGGACAAAAGTTACCTTTCCAGAGGCCAAAAATTGGTTTATTGGCACCGAGAGAAATACCCAATGGCGACACCGCTTCTTTGGAATC
AACAAAGGTTCCAAAATTTGGCGTTGCGAAGAAGTGGAATGAGTTTGTGGAAGAAAAGGGATTGAAAAGTGGAGGGCATGTTCAACTTTGGAGCTTCAAAAAAGATGATG
AATTTGAGGCTTCTTGTCTTTGTCTTGTTAGGAATGACTTGAGCCAAGACTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCATGCCTAAATGGTGGTGTGGACAAAAGTTACCTTTCCAGAGGCCAAAAATTGGTTTATTGGCACCGAGAGAAATACCCAATGGCGACACCGCTTCTTTGGAATC
AACAAAGGTTCCAAAATTTGGCGTTGCGAAGAAGTGGAATGAGTTTGTGGAAGAAAAGGGATTGAAAAGTGGAGGGCATGTTCAACTTTGGAGCTTCAAAAAAGATGATG
AATTTGAGGCTTCTTGTCTTTGTCTTGTTAGGAATGACTTGAGCCAAGACTCATAG
Protein sequenceShow/hide protein sequence
MSMPKWWCGQKLPFQRPKIGLLAPREIPNGDTASLESTKVPKFGVAKKWNEFVEEKGLKSGGHVQLWSFKKDDEFEASCLCLVRNDLSQDS