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Clc01G06560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description10 kDa chaperonin-like
Genome locationClcChr01:6496559..6497671
RNA-Seq ExpressionClc01G06560
SyntenyClc01G06560
Gene Ontology termsGO:0006457 - protein folding (biological process)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR011032 - GroES-like superfamily
IPR020818 - GroES chaperonin family
IPR037124 - GroES chaperonin superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3432182.1 hypothetical protein FNV43_RR26921 [Rhamnella rubrinervis]1.9e-3289.02Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MA+RLIP+ NRVL+EKI+PPSKT+AGILLPESSTKLNSGKVVAVGPGARD SGN+VPVCVKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

XP_004150598.1 10 kDa chaperonin, mitochondrial [Cucumis sativus]1.5e-3291.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MA+RLIPS NRVLIEKI+PPSKTSAGILLPESS+KLNSGKV+AVGPGARD SGNLVPVCVKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

XP_008467132.1 PREDICTED: 10 kDa chaperonin-like [Cucumis melo]1.5e-3291.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIPS NRVLIEKI+PPSKTSAGILLPESS+KLNSGKV+AVGPGARD +GNLVPVCVKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

XP_022152333.1 10 kDa chaperonin, mitochondrial-like [Momordica charantia]3.2e-3291.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIP  NRVLIEKI+PPSKT+AGILLPESSTKLNSGKVVAVGPGARD SGNLVPV VKEGDTVLLP+YGGTPVKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

XP_038907054.1 10 kDa chaperonin, mitochondrial-like [Benincasa hispida]3.1e-3595.12Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIPS NRVLIEKILPPSKTSAGILLPESSTKLNSGKV+AVGPGARDNSGNL+PVCVKEGDTVLLPEYGGTPVKLG+KE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

TrEMBL top hitse value%identityAlignment
A0A0A0KPH4 Uncharacterized protein1.6e-3764.79Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKETRRRFEIMILEIAVSSQN
        MA+RLIPS NRVLIEKI+PPSKTSAGILLPESS+KLNSGKV+AVGPGARD SGNLVPVCVKEGDTVLLPEYGGT VKLGEKE    F  + +E  V   N
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKETRRRFEIMILEIAVSSQN

Query:  --------------------------CSIYLEMKTFWELYMV
                                   SI LEMKTFWELYM+
Subjt:  --------------------------CSIYLEMKTFWELYMV

A0A1S3CU36 10 kDa chaperonin-like7.0e-3391.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIPS NRVLIEKI+PPSKTSAGILLPESS+KLNSGKV+AVGPGARD +GNLVPVCVKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

A0A5D3E3M3 10 kDa chaperonin-like7.0e-3391.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIPS NRVLIEKI+PPSKTSAGILLPESS+KLNSGKV+AVGPGARD +GNLVPVCVKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

A0A6J1DEL3 10 kDa chaperonin, mitochondrial-like1.6e-3291.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIP  NRVLIEKI+PPSKT+AGILLPESSTKLNSGKVVAVGPGARD SGNLVPV VKEGDTVLLP+YGGTPVKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

A0A6J1JRD8 10 kDa chaperonin, mitochondrial-like1.6e-3291.46Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIP FNRVLIEKI+PPSKT+AGILLPESSTKLNSGKVVAVGPGARD SGNL+PV VKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

SwissProt top hitse value%identityAlignment
O59804 10 kDa heat shock protein, mitochondrial2.7e-1345.12Show/hide
Query:  AKRLIPSFNRVLIEKILPPSKTSAGILLPESST-KLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        AK ++P  +R+L+++I   +KT++GI LPE S  KL+ G+V++VG G  +  G L    V  GD VLLP YGG+ +K+GE+E
Subjt:  AKRLIPSFNRVLIEKILPPSKTSAGILLPESST-KLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

P34893 10 kDa chaperonin, mitochondrial4.6e-2971.95Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        M KRLIP+FNR+L+++++ P+KT +GILLPE S+KLNSGKV+AVGPG+RD  G L+PV VKEGDTVLLPEYGGT VKLGE E
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

P38910 10 kDa heat shock protein, mitochondrial5.4e-1447.56Show/hide
Query:  AKRLIPSFNRVLIEKILPPSKTSAGILLPESST-KLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        AK ++P  +RVL+++I   +KT++G+ LPE +  KLN  +VVAVGPG  D +GN V   VK GD VL+P++GG+ +KLG  +
Subjt:  AKRLIPSFNRVLIEKILPPSKTSAGILLPESST-KLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

Q64433 10 kDa heat shock protein, mitochondrial3.5e-1349.38Show/hide
Query:  KRLIPSFNRVLIEKILPPSKTSAGILLPESST-KLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        ++ +P F+RVL+E+    + T  GI+LPE S  K+    VVAVG G +  SG + PV VK GD VLLPEYGGT V L +K+
Subjt:  KRLIPSFNRVLIEKILPPSKTSAGILLPESST-KLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

Q96539 10 kDa chaperonin7.8e-2971.95Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        M KRLIP+FNR+L++ ++ P+KT +GILLPE ++KLNSGKV+AVGPG+RD  G L+PV VKEGDTVLLPEYGGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

Arabidopsis top hitse value%identityAlignment
AT1G14980.1 chaperonin 103.2e-3071.95Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        M KRLIP+FNR+L+++++ P+KT +GILLPE S+KLNSGKV+AVGPG+RD  G L+PV VKEGDTVLLPEYGGT VKLGE E
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

AT1G23100.1 GroES-like family protein3.5e-3279.27Show/hide
Query:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE
        MAKRLIP+ NRVL+EKILPPSKT +GILLPE S++LNSG+V+AVGPGARD +GNL+PV VKEGD VLLPE+GGT VKLGEKE
Subjt:  MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKE

AT5G20720.1 chaperonin 202.3e-0740.79Show/hide
Query:  KRLIPSFNRVLIEKILPPSKTSAGILLPESS-TKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVK
        K L P  +RV I+      KT+ G+LL E++  K + G V+AVGPG+ D  G + P+ V  G TVL  +Y G   K
Subjt:  KRLIPSFNRVLIEKILPPSKTSAGILLPESS-TKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVK

AT5G20720.2 chaperonin 202.3e-0740.79Show/hide
Query:  KRLIPSFNRVLIEKILPPSKTSAGILLPESS-TKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVK
        K L P  +RV I+      KT+ G+LL E++  K + G V+AVGPG+ D  G + P+ V  G TVL  +Y G   K
Subjt:  KRLIPSFNRVLIEKILPPSKTSAGILLPESS-TKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVK

AT5G20720.3 chaperonin 202.3e-0740.79Show/hide
Query:  KRLIPSFNRVLIEKILPPSKTSAGILLPESS-TKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVK
        K L P  +RV I+      KT+ G+LL E++  K + G V+AVGPG+ D  G + P+ V  G TVL  +Y G   K
Subjt:  KRLIPSFNRVLIEKILPPSKTSAGILLPESS-TKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCGCTTGATTCCATCCTTCAATCGTGTCTTGATTGAGAAAATTCTTCCTCCTTCCAAAACCTCTGCCGGCATTCTTCTCCCGGAGAGCTCCACCAAGTTGAA
CTCCGGCAAGGTGGTTGCGGTGGGACCTGGTGCACGGGATAACAGTGGGAATCTGGTTCCGGTCTGTGTGAAAGAAGGCGATACCGTTCTTTTGCCTGAATATGGAGGCA
CGCCGGTGAAGCTCGGGGAGAAAGAGACTAGGCGTAGATTTGAGATAATGATTTTAGAAATTGCTGTTTCTTCCCAAAACTGTTCCATTTATTTAGAGATGAAGACATTT
TGGGAACTTTACATGGTTGATGGATTGACCGTTCTGATTCAACACTTCTTGTTGAATGTTAGAATGAAGGATATGATCAATTCATGCATTTTTCTTGATGGTTGGGAGGA
ATGGAGAACTATTGTAGTTGATGGCTAA
mRNA sequenceShow/hide mRNA sequence
TCCTCGCACCTGAACTCAAGAGCCCTAATTCTTCGAGCACGGACGTATGGCGAAGCGCTTGATTCCATCCTTCAATCGTGTCTTGATTGAGAAAATTCTTCCTCCTTCCA
AAACCTCTGCCGGCATTCTTCTCCCGGAGAGCTCCACCAAGTTGAACTCCGGCAAGGTGGTTGCGGTGGGACCTGGTGCACGGGATAACAGTGGGAATCTGGTTCCGGTC
TGTGTGAAAGAAGGCGATACCGTTCTTTTGCCTGAATATGGAGGCACGCCGGTGAAGCTCGGGGAGAAAGAGACTAGGCGTAGATTTGAGATAATGATTTTAGAAATTGC
TGTTTCTTCCCAAAACTGTTCCATTTATTTAGAGATGAAGACATTTTGGGAACTTTACATGGTTGATGGATTGACCGTTCTGATTCAACACTTCTTGTTGAATGTTAGAA
TGAAGGATATGATCAATTCATGCATTTTTCTTGATGGTTGGGAGGAATGGAGAACTATTGTAGTTGATGGCTAA
Protein sequenceShow/hide protein sequence
MAKRLIPSFNRVLIEKILPPSKTSAGILLPESSTKLNSGKVVAVGPGARDNSGNLVPVCVKEGDTVLLPEYGGTPVKLGEKETRRRFEIMILEIAVSSQNCSIYLEMKTF
WELYMVDGLTVLIQHFLLNVRMKDMINSCIFLDGWEEWRTIVVDG