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Clc01G06790 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06790
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:6795420..6795800
RNA-Seq ExpressionClc01G06790
SyntenyClc01G06790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057401.1 hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa]1.6e-0843.48Show/hide
Query:  KAKKRSY-LLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRL-SKKSVSSPSDQSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKD
        K  KR+Y L KPF K F R++TSF NSW+ I N DLLE  CVK+QVP +   KSV S S  +  + S  +     V+ VRG               +  D
Subjt:  KAKKRSY-LLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRL-SKKSVSSPSDQSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKD

Query:  SDEVSMVSASSEELE
        S+E S+VS SSE+LE
Subjt:  SDEVSMVSASSEELE

XP_038876689.1 uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida]5.9e-0837.61Show/hide
Query:  KRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP-RLSKKSVSSPSDQSSFSFSDFTIPGCKVN------FVRGFPERLSSKMHHKQQVLE
        + S+LLKPFPK+F R K+S + +WSL+ N +LLE+CC +VQ+P   +++SV  P+  SS      T P    N      +V+G P  +        + L 
Subjt:  KRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP-RLSKKSVSSPSDQSSFSFSDFTIPGCKVN------FVRGFPERLSSKMHHKQQVLE

Query:  KDSDEVSMVSASSEELE
        ++ DE S+ S SSE+L+
Subjt:  KDSDEVSMVSASSEELE

XP_038876692.1 uncharacterized protein LOC120069082 isoform X2 [Benincasa hispida]4.2e-0655.81Show/hide
Query:  KRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP
        + S+LLKPFPK+F R K+S + +WSL+ N +LLE+CC +VQ+P
Subjt:  KRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP

XP_038886519.1 uncharacterized protein LOC120076693 isoform X2 [Benincasa hispida]3.2e-0650Show/hide
Query:  KAKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSKKS
        K   + +L +P+ KHF+R+KTSF N W+ ++N DLLE+CC+KVQ+P  S  S
Subjt:  KAKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSKKS

XP_038887514.1 RNA-binding protein 39-like isoform X1 [Benincasa hispida]8.3e-1068.89Show/hide
Query:  AKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP
        +KK S LLKPFP+HF+R+KTSF NSW+ + N DLLE CCVKVQ+P
Subjt:  AKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVP

TrEMBL top hitse value%identityAlignment
A0A0A0KHK4 Uncharacterized protein1.0e-0553.57Show/hide
Query:  AKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSK-KSVSSP
        +++ S L K F KHF R+KTSF NSW+ I N D+LE  CVK+QVP L + +S S P
Subjt:  AKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSK-KSVSSP

A0A5A7UV76 Uncharacterized protein7.5e-0943.48Show/hide
Query:  KAKKRSY-LLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRL-SKKSVSSPSDQSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKD
        K  KR+Y L KPF K F R++TSF NSW+ I N DLLE  CVK+QVP +   KSV S S  +  + S  +     V+ VRG               +  D
Subjt:  KAKKRSY-LLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRL-SKKSVSSPSDQSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKD

Query:  SDEVSMVSASSEELE
        S+E S+VS SSE+LE
Subjt:  SDEVSMVSASSEELE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCAAAAAAACGCTCCTATTTACTCAAGCCTTTCCCCAAGCACTTTGTCAGGGAAAAGACTTCTTTTATTAACTCGTGGTCTCTGATTGTGAACTTGGATTTGCT
CGAGAATTGTTGTGTTAAAGTTCAAGTTCCTAGGCTTTCAAAAAAGTCAGTTTCCTCCCCCTCGGATCAATCCTCCTTTTCCTTTTCAGACTTTACAATTCCAGGCTGTA
AAGTAAATTTTGTTAGAGGTTTTCCGGAAAGACTTTCAAGCAAAATGCACCACAAACAACAAGTTTTAGAAAAGGATTCAGATGAAGTCTCTATGGTAAGTGCTAGTAGC
GAAGAATTAGAAAATCTTGTTTTGGAGGAGCCCCACGAGGAAAAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCAAAAAAACGCTCCTATTTACTCAAGCCTTTCCCCAAGCACTTTGTCAGGGAAAAGACTTCTTTTATTAACTCGTGGTCTCTGATTGTGAACTTGGATTTGCT
CGAGAATTGTTGTGTTAAAGTTCAAGTTCCTAGGCTTTCAAAAAAGTCAGTTTCCTCCCCCTCGGATCAATCCTCCTTTTCCTTTTCAGACTTTACAATTCCAGGCTGTA
AAGTAAATTTTGTTAGAGGTTTTCCGGAAAGACTTTCAAGCAAAATGCACCACAAACAACAAGTTTTAGAAAAGGATTCAGATGAAGTCTCTATGGTAAGTGCTAGTAGC
GAAGAATTAGAAAATCTTGTTTTGGAGGAGCCCCACGAGGAAAAGATTTAG
Protein sequenceShow/hide protein sequence
MKAKKRSYLLKPFPKHFVREKTSFINSWSLIVNLDLLENCCVKVQVPRLSKKSVSSPSDQSSFSFSDFTIPGCKVNFVRGFPERLSSKMHHKQQVLEKDSDEVSMVSASS
EELENLVLEEPHEEKI