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Clc01G06800 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06800
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionzf-RVT domain-containing protein
Genome locationClcChr01:6797820..6798149
RNA-Seq ExpressionClc01G06800
SyntenyClc01G06800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]1.4e-0536.36Show/hide
Query:  PYGSL----KPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA
        PY S+     P +I   +W+  +G +NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Subjt:  PYGSL----KPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]8.2e-0650.94Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDC
        P+RINI +WI++   +N+S++LQKK P N + PSICP CLK   NL ++F  C
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDC

VVA31005.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-0539.29Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA
        P +I   +W+  +GN+NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]3.9e-0843.55Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMSNV
        P+R+N+  WIL  G LNT+D++QKK PS+ ++PS C  C K+ ++ D++FF C +A+   N+
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMSNV

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]1.6e-0642.11Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYAN
        P+R+NI +WI++ G LN ++VLQKK P+  + P++CP CL + +   ++FF C Y++
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYAN

TrEMBL top hitse value%identityAlignment
A0A5D3DE60 zf-RVT domain-containing protein4.0e-0650.94Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDC
        P+RINI +WI++   +N+S++LQKK P N + PSICP CLK   NL ++F  C
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDC

A0A5E4FU23 zf-RVT domain-containing protein (Fragment)5.2e-0639.29Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA
        P +I   +W+  +GN+NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA

A0A5H2XQW2 TatD related DNase6.7e-0636.36Show/hide
Query:  PYGSL----KPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA
        PY S+     P +I   +W+  +G +NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Subjt:  PYGSL----KPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA

A0A6J1DIE2 uncharacterized protein LOC1110207651.9e-0843.55Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMSNV
        P+R+N+  WIL  G LNT+D++QKK PS+ ++PS C  C K+ ++ D++FF C +A+   N+
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMSNV

M5W794 Reverse transcriptase domain-containing protein (Fragment)6.7e-0637.5Show/hide
Query:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA
        P +I   +W+ ++G +NT D +Q++ P  C+ PS C  C +N +N+D++F  CSY+
Subjt:  PKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATTGGAATTCAACCATATGGTAGTCTAAAGCCAAAGAGAATAAACATTCGTTTATGGATTTTGATTAGTGGCAACCTTAATACATCAGATGTTTTGCAGAAGAA
ATTGCCATCTAATTGCATTATGCCGTCTATTTGCCCTTCATGTCTAAAGAATGAGGATAATCTTGATTATGTTTTCTTTGATTGCTCTTATGCCAATCTGATGTCAAATG
TTGGCAGCCCAGTGGGTCTTCTCCAATATCTTCAGAAGCATACTTTCAATTTCTTTATGGCTCTCTCATTAATTCCAAAACGAAGTTGCTTTGGAATAATGGAGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAATTGGAATTCAACCATATGGTAGTCTAAAGCCAAAGAGAATAAACATTCGTTTATGGATTTTGATTAGTGGCAACCTTAATACATCAGATGTTTTGCAGAAGAA
ATTGCCATCTAATTGCATTATGCCGTCTATTTGCCCTTCATGTCTAAAGAATGAGGATAATCTTGATTATGTTTTCTTTGATTGCTCTTATGCCAATCTGATGTCAAATG
TTGGCAGCCCAGTGGGTCTTCTCCAATATCTTCAGAAGCATACTTTCAATTTCTTTATGGCTCTCTCATTAATTCCAAAACGAAGTTGCTTTGGAATAATGGAGTTATAG
Protein sequenceShow/hide protein sequence
MVIGIQPYGSLKPKRINIRLWILISGNLNTSDVLQKKLPSNCIMPSICPSCLKNEDNLDYVFFDCSYANLMSNVGSPVGLLQYLQKHTFNFFMALSLIPKRSCFGIMEL