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Clc01G06910 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G06910
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr01:6907086..6907325
RNA-Seq ExpressionClc01G06910
SyntenyClc01G06910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648597.1 hypothetical protein Csa_008169, partial [Cucumis sativus]2.5e-2082.61Show/hide
Query:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPIS
        +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL ++  IS
Subjt:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPIS

XP_011655448.1 uncharacterized protein LOC105435535 [Cucumis sativus]3.5e-2283.33Show/hide
Query:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL ++  ISVGN
Subjt:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

XP_016903705.1 PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo]6.3e-2486.11Show/hide
Query:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        +T A DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL ++ PISVGN
Subjt:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

XP_022146403.1 uncharacterized protein LOC111015628 [Momordica charantia]4.2e-2084.06Show/hide
Query:  ASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        A D DSD +Q+P+H QV KIK+EIEKIKHPSLQQSEM THLLLRGISISK RSRSPLGLAAERPISVGN
Subjt:  ASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

XP_038875254.1 uncharacterized protein LOC120067758 [Benincasa hispida]3.6e-2794.52Show/hide
Query:  TATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        T T A DSDSDVSQLPIHSQV+KIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
Subjt:  TATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

TrEMBL top hitse value%identityAlignment
A0A0A0KPB9 Uncharacterized protein1.7e-2283.33Show/hide
Query:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        +  A DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL ++  ISVGN
Subjt:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

A0A1S4E6T1 uncharacterized protein LOC1035045343.0e-2486.11Show/hide
Query:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        +T A DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL ++ PISVGN
Subjt:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

A0A5A7TYE7 Uncharacterized protein3.0e-2486.11Show/hide
Query:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        +T A DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL ++ PISVGN
Subjt:  ATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

A0A6J1CYH4 uncharacterized protein LOC1110156282.0e-2084.06Show/hide
Query:  ASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        A D DSD +Q+P+H QV KIK+EIEKIKHPSLQQSEM THLLLRGISISK RSRSPLGLAAERPISVGN
Subjt:  ASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

A0A6J1E1V2 uncharacterized protein LOC111430025 isoform X13.9e-1973.42Show/hide
Query:  MENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        MEN+TA A    D     SQ P+H QV KIK+EIEKIKHPSLQQSEM+THLLLR +SISKPR RSPLGLAAER ISVGN
Subjt:  MENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24600.1 unknown protein2.0e-0754.93Show/hide
Query:  ASDSDSDVSQLP-IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA-AERPISVGN
        A+  D     +P IHSQV KIK+E EKI+HPSL+Q EM   L+ R I +   RSRSPLGL   ER I VGN
Subjt:  ASDSDSDVSQLP-IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA-AERPISVGN

AT1G67920.1 unknown protein6.1e-0966.67Show/hide
Query:  IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
        IHSQVEKIKKE EKI+ PSLQQ EM    +L  I   + RSRSPLGL  ER ISVGN
Subjt:  IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGAT
CAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGC
CTATTTCCGTCGGGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAACGCGACGGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGAT
CAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGC
CTATTTCCGTCGGGAATTAA
Protein sequenceShow/hide protein sequence
MENATATATVASDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN