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Clc01G07360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G07360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionzf-RVT domain-containing protein
Genome locationClcChr01:7578926..7584487
RNA-Seq ExpressionClc01G07360
SyntenyClc01G07360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG71894.1 hypothetical protein EZV62_000473 [Acer yangbiense]2.1e-0435Show/hide
Query:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKC
        +++LI +   W+   + ++F PEEA LI +IP+    R D  +WH  K+  F+VK+ YRVA   + +   F SS     C
Subjt:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKC

XP_022159001.1 uncharacterized protein LOC111025446 [Momordica charantia]2.9e-0643.94Show/hide
Query:  WDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNS
        W +  +   FSP+EA+ I +IP+G ++R DKLIWH EK  +++VK+GYR+A   V+K  +   S+S
Subjt:  WDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNS

XP_030478186.1 uncharacterized protein LOC115695246 [Cannabis sativa]1.6e-0441.79Show/hide
Query:  SWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNS
        SWD   L+Q+F       I  +PIGG  + D LIW+ EK+ +FSVK+ Y +A +  L      SSNS
Subjt:  SWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNS

XP_030948949.1 uncharacterized protein LOC115972854 [Quercus lobata]2.1e-0431.63Show/hide
Query:  SCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKCIALCLPFPWTSGFANSAEGMAVKLG
        +C W    +   FSP EA LI+ IP+   + +D L W    N L+SVK+GY++     L D    S  SL+K +   +   W     N A+ +  + G
Subjt:  SCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKCIALCLPFPWTSGFANSAEGMAVKLG

XP_042950057.1 uncharacterized protein LOC122282168 [Carya illinoinensis]2.1e-0447.06Show/hide
Query:  SCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGY
        SCSW  G + + F  EEA +I  IP+   +  DKL+W G K+ LFSVK+ Y
Subjt:  SCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGY

TrEMBL top hitse value%identityAlignment
A0A5C7IST2 RNase H domain-containing protein1.0e-0435Show/hide
Query:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKC
        +++LI +   W+   + ++F PEEA LI +IP+    R D  +WH  K+  F+VK+ YRVA   + +   F SS     C
Subjt:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKC

A0A6J1E2L3 uncharacterized protein LOC1110254461.4e-0643.94Show/hide
Query:  WDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNS
        W +  +   FSP+EA+ I +IP+G ++R DKLIWH EK  +++VK+GYR+A   V+K  +   S+S
Subjt:  WDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNS

B8BN96 Reverse transcriptase domain-containing protein1.3e-0432.5Show/hide
Query:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVV-LKDVVFDSSNSLTK
        ++ LI    SWD+  + Q+F   +A +I  I I  +S  D + WH +KN +FSV++ YR+A  +V +++     +N++ K
Subjt:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVV-LKDVVFDSSNSLTK

Q0IPZ9 Os12g0156200 protein1.3e-0432.5Show/hide
Query:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVV-LKDVVFDSSNSLTK
        ++ LI    SWD+  + Q+F   +A +I  I I  +S  D + WH +KN +FSV++ YR+A  +V +++     +N++ K
Subjt:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVV-LKDVVFDSSNSLTK

Q7X970 BZIP-like protein1.3e-0432.5Show/hide
Query:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVV-LKDVVFDSSNSLTK
        ++ LI    SWD+  + Q+F   +A +I  I I  +S  D + WH +KN +FSV++ YR+A  +V +++     +N++ K
Subjt:  MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVV-LKDVVFDSSNSLTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTCTTATTGCAACATCGTGTTCTTGGGACATTGGTACTTTGTTTCAGCATTTTTCACCCGAGGAAGCTAGGTTGATTCAAACCATCCCTATTGGTGGTCAGTC
TAGGCTCGATAAACTTATTTGGCATGGGGAGAAGAATGAACTGTTCTCGGTGAAGAATGGATATCGTGTGGCCTGTCATGTTGTTCTTAAGGATGTGGTTTTTGACTCCT
CCAACTCTCTCACTAAATGTATTGCTCTTTGCTTACCATTTCCTTGGACTTCTGGTTTTGCTAATTCGGCCGAAGGAATGGCTGTCAAATTGGGTCTCTCTTTGGCCTTA
GATGCGGATCCATTCCACGATTTCACAAATTGGTGGACCCAGTCCACGATTGCCACTGAAAATCGTGTACCAGGTACACGATTACCCTGCCAGCTCGCTGCCCCGTTGCC
ATGCTGCCACCTCGTCAGCATCGAACTCGTGGACGGGGTCCACGATTTCGGTAATCATGGACCCGTCGTGGACCCGGTCCACGAGTTTGGCGGAAGTCGTGGACCCTGTC
CACGAGTTCGGCAGGGTCCACGAGTTCGGCTTCCACGTCAACTCCCTATCAGCAACTTCACTGAAATCGTGAGTACCAGAAGTGGTTGTCACCGGAATTCATCATCGAAG
GTGGTTATCGTTGGAGTTGTCGTCGAAAGTGGTTGTCGAAGCCTGGAGTTGGTGCATGAAGATGCTAGTTGGAGAATGTTGATGGAGTTGCTTGTGCGAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCTCTTATTGCAACATCGTGTTCTTGGGACATTGGTACTTTGTTTCAGCATTTTTCACCCGAGGAAGCTAGGTTGATTCAAACCATCCCTATTGGTGGTCAGTC
TAGGCTCGATAAACTTATTTGGCATGGGGAGAAGAATGAACTGTTCTCGGTGAAGAATGGATATCGTGTGGCCTGTCATGTTGTTCTTAAGGATGTGGTTTTTGACTCCT
CCAACTCTCTCACTAAATGTATTGCTCTTTGCTTACCATTTCCTTGGACTTCTGGTTTTGCTAATTCGGCCGAAGGAATGGCTGTCAAATTGGGTCTCTCTTTGGCCTTA
GATGCGGATCCATTCCACGATTTCACAAATTGGTGGACCCAGTCCACGATTGCCACTGAAAATCGTGTACCAGGTACACGATTACCCTGCCAGCTCGCTGCCCCGTTGCC
ATGCTGCCACCTCGTCAGCATCGAACTCGTGGACGGGGTCCACGATTTCGGTAATCATGGACCCGTCGTGGACCCGGTCCACGAGTTTGGCGGAAGTCGTGGACCCTGTC
CACGAGTTCGGCAGGGTCCACGAGTTCGGCTTCCACGTCAACTCCCTATCAGCAACTTCACTGAAATCGTGAGTACCAGAAGTGGTTGTCACCGGAATTCATCATCGAAG
GTGGTTATCGTTGGAGTTGTCGTCGAAAGTGGTTGTCGAAGCCTGGAGTTGGTGCATGAAGATGCTAGTTGGAGAATGTTGATGGAGTTGCTTGTGCGAAGGTGA
Protein sequenceShow/hide protein sequence
MTSLIATSCSWDIGTLFQHFSPEEARLIQTIPIGGQSRLDKLIWHGEKNELFSVKNGYRVACHVVLKDVVFDSSNSLTKCIALCLPFPWTSGFANSAEGMAVKLGLSLAL
DADPFHDFTNWWTQSTIATENRVPGTRLPCQLAAPLPCCHLVSIELVDGVHDFGNHGPVVDPVHEFGGSRGPCPRVRQGPRVRLPRQLPISNFTEIVSTRSGCHRNSSSK
VVIVGVVVESGCRSLELVHEDASWRMLMELLVRR