; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G07620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G07620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionribonuclease P protein subunit p38
Genome locationClcChr01:7745052..7748084
RNA-Seq ExpressionClc01G07620
SyntenyClc01G07620
Gene Ontology termsGO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050271.1 ribonuclease P protein subunit p38 isoform X5 [Cucumis melo var. makuwa]6.4e-4182.76Show/hide
Query:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
        MGK  KSSA PVA +QSKP ED SYEGERLDELL SIQREIKTAR LNAESLPEKIWLKKQ+AIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVV
Subjt:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV

Query:  YSCIYVGQCHLDLGFR
        YS IYVGQC+  LGFR
Subjt:  YSCIYVGQCHLDLGFR
TYJ98136.1 ribonuclease P protein subunit p38 isoform X6 [Cucumis melo var. makuwa]2.6e-4283.48Show/hide
Query:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY
        MGK  KSSA PVA +QSKP EDSYEGERLDELL SIQREIKTAR LNAESLPEKIWLKKQ+AIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVVY
Subjt:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY

Query:  SCIYVGQCHLDLGFR
        S IYVGQC+  LGFR
Subjt:  SCIYVGQCHLDLGFR
XP_008466263.1 PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]3.4e-4283.48Show/hide
Query:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY
        MGK  KSSA PVA +QSKP EDSYEGERLDELL SIQREIKTAR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVVY
Subjt:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY

Query:  SCIYVGQCHLDLGFR
        S IYVGQC+  LGFR
Subjt:  SCIYVGQCHLDLGFR
XP_016903668.1 PREDICTED: uncharacterized protein LOC103503720 isoform X4 [Cucumis melo]8.4e-4182.76Show/hide
Query:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
        MGK  KSSA PVA +QSKP ED SYEGERLDELL SIQREIKTAR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVV
Subjt:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV

Query:  YSCIYVGQCHLDLGFR
        YS IYVGQC+  LGFR
Subjt:  YSCIYVGQCHLDLGFR
XP_038875290.1 ribonuclease P protein subunit p38 [Benincasa hispida]4.4e-4292.86Show/hide
Query:  MGKKAKSSAPVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
        MGKKAKSSAP A++QSKPNEDSYEGERLDE LQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPN+KACTV+LQ V
Subjt:  MGKKAKSSAPVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
TrEMBL top hitse value%identityAlignment
A0A0A0KJ77 Uncharacterized protein2.4e-4181.03Show/hide
Query:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
        MGK  KSS+ PVA +QSKPN+D SYEGERLDELL SIQREIKT R LNAESLPEK WLKKQFAIGVNEVTRVLERMTP GDSAR+MNPN+K CTV+LQV+
Subjt:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV

Query:  YSCIYVGQCHLDLGFR
        YS IYVGQC+  LGFR
Subjt:  YSCIYVGQCHLDLGFR
A0A1S3CQU5 uncharacterized protein LOC103503720 isoform X21.6e-4283.48Show/hide
Query:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY
        MGK  KSSA PVA +QSKP EDSYEGERLDELL SIQREIKTAR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVVY
Subjt:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY

Query:  SCIYVGQCHLDLGFR
        S IYVGQC+  LGFR
Subjt:  SCIYVGQCHLDLGFR
A0A1S4E613 uncharacterized protein LOC103503720 isoform X44.1e-4182.76Show/hide
Query:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
        MGK  KSSA PVA +QSKP ED SYEGERLDELL SIQREIKTAR LNAESLPEK WLKKQFAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVV
Subjt:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV

Query:  YSCIYVGQCHLDLGFR
        YS IYVGQC+  LGFR
Subjt:  YSCIYVGQCHLDLGFR
A0A5A7U9R8 Ribonuclease P protein subunit p38 isoform X53.1e-4182.76Show/hide
Query:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV
        MGK  KSSA PVA +QSKP ED SYEGERLDELL SIQREIKTAR LNAESLPEKIWLKKQ+AIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVV
Subjt:  MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVV

Query:  YSCIYVGQCHLDLGFR
        YS IYVGQC+  LGFR
Subjt:  YSCIYVGQCHLDLGFR
A0A5D3BGG5 Ribonuclease P protein subunit p38 isoform X61.3e-4283.48Show/hide
Query:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY
        MGK  KSSA PVA +QSKP EDSYEGERLDELL SIQREIKTAR LNAESLPEKIWLKKQ+AIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQVVY
Subjt:  MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVY

Query:  SCIYVGQCHLDLGFR
        S IYVGQC+  LGFR
Subjt:  SCIYVGQCHLDLGFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein8.1e-1857.47Show/hide
Query:  DSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVYSCIYVGQC
        D YEGERL  LL  IQR I+T++  N  SLPEKIWLKKQ AIG+NEVTRVLERM P+  S +  NP       +LQVV   I V  C
Subjt:  DSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVYSCIYVGQC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAACTTTTCCGCGGGAATTTGATCCCTTGCGCAATTCTCGCGGAGAACGGGAACAAGAAGGCTTCCTCGTCTCACCCCTGCCTCATGGGCATCTCTAGGAATTT
ACATCTCATTCGGGCGGGTCGGGTCTTGCTAGATGGGCATGTCTTTGTGTACCATAACTCCACCCAAATTTCAAATAAAGCCGCGAGTGGGCCGTTGAGAATGCAGTGCT
ACAAGTTTTCAGTCATGGGAAAGAAGGCTAAATCTTCTGCTCCTGTTGCACTCGTTCAATCCAAACCTAACGAAGATTCCTATGAAGGGGAACGTCTCGATGAGTTGCTA
CAATCGATTCAGAGAGAGATAAAGACAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTTAAGAAACAATTCGCAATTGGAGTTAATGAAGTTACTAG
AGTCCTTGAACGGATGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTTTAAGGCGTGTACAGTCAGGCTTCAGGTAGTCTACTCTTGTATTTATGTTGGGC
AATGCCATCTTGATCTTGGGTTTAGAGGAATTTGCCGAATGGTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAACTTTTCCGCGGGAATTTGATCCCTTGCGCAATTCTCGCGGAGAACGGGAACAAGAAGGCTTCCTCGTCTCACCCCTGCCTCATGGGCATCTCTAGGAATTT
ACATCTCATTCGGGCGGGTCGGGTCTTGCTAGATGGGCATGTCTTTGTGTACCATAACTCCACCCAAATTTCAAATAAAGCCGCGAGTGGGCCGTTGAGAATGCAGTGCT
ACAAGTTTTCAGTCATGGGAAAGAAGGCTAAATCTTCTGCTCCTGTTGCACTCGTTCAATCCAAACCTAACGAAGATTCCTATGAAGGGGAACGTCTCGATGAGTTGCTA
CAATCGATTCAGAGAGAGATAAAGACAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTTAAGAAACAATTCGCAATTGGAGTTAATGAAGTTACTAG
AGTCCTTGAACGGATGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTTTAAGGCGTGTACAGTCAGGCTTCAGGTAGTCTACTCTTGTATTTATGTTGGGC
AATGCCATCTTGATCTTGGGTTTAGAGGAATTTGCCGAATGGTTAATTAATAGAATCCTAGCTTTACCCTCCTACGGCAGTGTTGTTGAACTTCACTTTATTATTTCTGG
TGGATTGATGGACCCTTCATTAGCTCGAAGCCATAAGTGTTTCTTTATTGGGTTTGTTTCAGTTTTGTGTCAATCTCATGCGTGCAACATGGATGTATTTATAATGTGTG
TGTGTCTTTCATGGGAAGAGGCAACCATTTTCAAACATGAGCTACATGTGGAGCTTCCATGAACTTTGCCGCTTTGGTGATAAGCTGGTTTCCTTAAACTTCATAAAGCC
CTCATTATTTTCATATAACTGGTGTCAAATGATATCAACAAAATCCTTAATGTCGTTAGCACGGTTACAAGCGTTCATGGGGAGTATGCTATTTTATTGGTATAGCCCAT
GAGCTGTACTTGGCCACAGTAGAAAACTTCTACAAGAATGACCCATTGTTTTGTATCCTACAGAGTGTTGTCTGTTTGTGAAGTACCCCATCTCAATGCTTGGTACTAGT
ACAAAGCAAATTTATTGGCCATGACATAGTGTTTCTTGTGTAGCAAGAACTGGGATGAGGCTTTGAACTCCTATTGGTAAGTACTATTTCCTCCCTGGTAACCTTAGTTT
CCCACTAAAACATTCCATAGGCTTACCATTCTTAGATAGAACTGCTCCTATCCCTTTAGCAGAAGCATCCATCTGGACTTTATTAATTCCATTACGGATCCTAAGAATAA
CTGTTTTGTAACAAGCATGCACTTAGAGATATTAAAGTAAAACTTGGTGGAATTTGAAGCAGTTTGTCGCCTAAGTAGACAATTAGGAACTAACCAATGTATGGTCATAA
TACATGTATCATGAGGCACGTAAAAGTACTTGGAGCATTGATCGAGCTAAAACCTACATGCACCACTTGCCTTACTTATAAAGACTTATCTGAGTCTTAAAAGGCTATTT
TTCATTTTCTCTTGGTTTGATTGCTGTGACTGCTTAATTGGCCAACAAGTTTTGGTGGTGGTGTCATTTTGTACAGGGAGTTAATATTTTATGGCGAGCTTCAAACTCTA
TTTCCAATACCAACTCTTTGTACCTTTCTAGTTCAGCAGTGAATGCCATTGTGAATTCCTTAGGACAGGCATCCTTTCTATGCTTGATATATAACTCTCAAATGTTAATT
AAACCCAACTTATCATGCTTTTCCTACTGTCTTTTCTGTATATGGTGTCTAATTAATTCGACATTTCACCTTTTATTTTGTAGGCGATACTGTTAACAGCTAACTGCAAC
CCTCGATGGCTGACAAACCACGTGCCAAGCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGATCATTAAGGTTAGGTGAACTCGTTAACCT
TAAAACAGCAATCGCAATTGGAATAAAGGCGAATGGAAGCCCTGTTAATCAACTTATTGATGAAATTCTTCAAAGAACAACATGAAAACACGTTTCTTGGGTACGACAAA
GTTGTCTGGTATACAGCAAAAATGATACGAAATTGAAGCAAATTCTTCCCTCTAGCAGTCTGAAATTTCTAGCTTGCTAATCACATGAAATGGATTGAGTTGATTCATTC
TAGATAACGACCACCACTATGGTTGGAAAGATAGTTCATTAGACTTAGTTGGAAATAATGTATGAAAGTATGGTGGTGTATCCTTATAAGTACAATTGGTTTAAGGGTAT
TCGAACCAGACTTCGTGGTCATTAACATGTCCGTATGTCAATCAGCTATACTTTGCCAATTCTTATGTTATTCATTGATTATTTGAATTGGGGATTATTTATTTTTGAAA
AGGGTTATTATTGTTTGTGGCTGATGGAGTTCCGAAAATTCATAATAACATTGTCTTGTACATTCAATTGGAAGTAATAGAGTGATAAGAGGTTGCTTGTGTTTGG
Protein sequenceShow/hide protein sequence
MGELFRGNLIPCAILAENGNKKASSSHPCLMGISRNLHLIRAGRVLLDGHVFVYHNSTQISNKAASGPLRMQCYKFSVMGKKAKSSAPVALVQSKPNEDSYEGERLDELL
QSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQVVYSCIYVGQCHLDLGFRGICRMVN