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Clc01G07850 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G07850
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box/kelch-repeat protein At4g19930-like
Genome locationClcChr01:7958230..7958574
RNA-Seq ExpressionClc01G07850
SyntenyClc01G07850
Gene Ontology termsNA
InterPro domainsIPR013187 - F-box associated domain, type 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146376.1 F-box/kelch-repeat protein At4g19930-like [Momordica charantia]2.0e-1550.43Show/hide
Query:  MEMWVLTDYQKQKWV--KEENFQYDMSDSDND-CRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSND--VID
        +EMWVL DYQ   WV  KE  FQYDMS  D+D C               + L  P+G        G +LLYYD+KRRRFRG EI GLS+ LS+ND  V D
Subjt:  MEMWVLTDYQKQKWV--KEENFQYDMSDSDND-CRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSND--VID

Query:  YSFDVYEENIMSLSSIL
         SFD YEENI++LSS++
Subjt:  YSFDVYEENIMSLSSIL
TrEMBL top hitse value%identityAlignment
A0A2P2K4Y2 F-box protein At5g62510-like2.7e-0541.74Show/hide
Query:  MEMWVLTDYQKQKWVKE-ENFQYDMSDSDNDCRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSNDVIDYSFD
        ME+WVL DYQK  WVK+   F +D ++S    R  P GT+ N  GE  LL  PI            +L+YDMKRR FR  E++GL +       I     
Subjt:  MEMWVLTDYQKQKWVKE-ENFQYDMSDSDNDCRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSNDVIDYSFD

Query:  VYEENIMSLSS-ILG
         YEE+IM+L   ILG
Subjt:  VYEENIMSLSS-ILG
A0A6J1CZ64 F-box/kelch-repeat protein At4g19930-like9.8e-1650.43Show/hide
Query:  MEMWVLTDYQKQKWV--KEENFQYDMSDSDND-CRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSND--VID
        +EMWVL DYQ   WV  KE  FQYDMS  D+D C               + L  P+G        G +LLYYD+KRRRFRG EI GLS+ LS+ND  V D
Subjt:  MEMWVLTDYQKQKWV--KEENFQYDMSDSDND-CRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSND--VID

Query:  YSFDVYEENIMSLSSIL
         SFD YEENI++LSS++
Subjt:  YSFDVYEENIMSLSSIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGTGGGTATTAACGGATTACCAGAAACAAAAGTGGGTTAAGGAAGAAAACTTCCAATACGACATGTCGGATTCGGATAACGACTGTCGTCTTCATCCTCTGGG
GACAATGACGAACGAGGGCGGTGAACAGACTTTACTGTTCAAACCCATTGGGAAAAATATGGATCGCCAACAACTTGGACGGCAGCTGCTTTACTACGACATGAAACGGC
GGCGTTTTCGTGGAGCTGAGATTGCTGGTCTGTCTCAATGCCTGTCGTCTAATGATGTTATAGATTATAGTTTTGATGTTTACGAAGAGAATATTATGAGTTTGTCCTCT
ATTTTGGGTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGTGGGTATTAACGGATTACCAGAAACAAAAGTGGGTTAAGGAAGAAAACTTCCAATACGACATGTCGGATTCGGATAACGACTGTCGTCTTCATCCTCTGGG
GACAATGACGAACGAGGGCGGTGAACAGACTTTACTGTTCAAACCCATTGGGAAAAATATGGATCGCCAACAACTTGGACGGCAGCTGCTTTACTACGACATGAAACGGC
GGCGTTTTCGTGGAGCTGAGATTGCTGGTCTGTCTCAATGCCTGTCGTCTAATGATGTTATAGATTATAGTTTTGATGTTTACGAAGAGAATATTATGAGTTTGTCCTCT
ATTTTGGGTGCTTAG
Protein sequenceShow/hide protein sequence
MEMWVLTDYQKQKWVKEENFQYDMSDSDNDCRLHPLGTMTNEGGEQTLLFKPIGKNMDRQQLGRQLLYYDMKRRRFRGAEIAGLSQCLSSNDVIDYSFDVYEENIMSLSS
ILGA