CuGenDBv2

Gene ID	Clc01G08080
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	ClcChr01:8248767..8259789
RNA-Seq Expression	Clc01G08080
Synteny	Clc01G08080
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579112.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-155

84.32

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Query:  PCPASRCRH-RHRTNSVQPLTLAVGEIAPSPLIFQIPKTLGGGLA--------------HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALR
        PC ASRC     R  + +  + +V    PS   F +  TLG  LA              +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALR
Subjt:  PCPASRCRH-RHRTNSVQPLTLAVGEIAPSPLIFQIPKTLGGGLA--------------HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALR

Query:  KEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHL
        KEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHL
Subjt:  KEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHL

Query:  PFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPR
        PFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPR
Subjt:  PFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPR

Query:  FELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        FELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  FELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

KAG7016636.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-155

84.32

Show/hide

Query:  PCPASRCRH-RHRTNSVQPLTLAVGEIAPSPLIFQIPKTLGGGLA--------------HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALR
        PC ASRC     R  + +  + +V    PS   F +  TLG  LA              +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALR
Subjt:  PCPASRCRH-RHRTNSVQPLTLAVGEIAPSPLIFQIPKTLGGGLA--------------HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALR

Query:  KEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHL
        KEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHL
Subjt:  KEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHL

Query:  PFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPR
        PFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPR
Subjt:  PFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPR

Query:  FELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        FELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  FELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

XP_004143747.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis sativus]

7.5e-156

98.57

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKK MGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

XP_008465711.1 PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo]

2.6e-156

98.93

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Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

XP_038907229.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Benincasa hispida]

7.5e-156

98.92

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKRDFLG
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-156

98.93

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

1.2e-156

98.93

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

A0A6J1DUL2 U3 small nucleolar ribonucleoprotein protein IMP4

4.6e-151

95.34

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Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKP PTELRNEE ALRKEIELED+ TAVPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        KPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

7.6e-154

96.42

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

6.4e-153

96.06

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEE ALRKEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQFAKELKIVFPNAQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        KPDTKRVVTFANQSDYISFRHHIYEK GGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

SwissProt top hits

e value

%identity

Alignment

Q0VD01 U3 small nucleolar ribonucleoprotein protein IMP4

3.0e-83

54.84

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RK+ E  ER   E+K K+R ALEE +  PTELR E +AL+  +E +D        H+DDEY  A   DPK++ITTSRDPS+ L  FAKELK+VFP AQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GT  EA PH+I++ F+++LG+R ++IL++LFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        K D++RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T  KR FL
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q5PQR5 U3 small nucleolar ribonucleoprotein protein IMP4

3.9e-83

54.48

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RK+ E  +R + EKK +++ ALEE +  PTELR E +AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  FAKELK+VFP AQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        K D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q5R947 U3 small nucleolar ribonucleoprotein protein IMP4

6.7e-83

54.48

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RK+ E  +R   E+K ++R ALEE +  PTELR E +AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  FAKELK+VFP AQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        K D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q8VHZ7 U3 small nucleolar ribonucleoprotein protein IMP4

3.9e-83

54.48

Show/hide

Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RK+ E  +R + EKK +++ ALEE +  PTELR E +AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  FAKELK+VFP AQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        K D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q96G21 U3 small nucleolar ribonucleoprotein protein IMP4

6.7e-83

54.48

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Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RK+ E  +R   E+K ++R ALEE +  PTELR E +AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  FAKELK+VFP AQR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        MNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVP
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        K D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

9.2e-128

77.14

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Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR
        +RKSLEG ER +YE+KR IREAL+EGKP PTELRN E  LR+EI+LED+ TAVPR+HIDDEYANA+E DPKIL+TTSR+PSAPL +F KELK VFPN+QR
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQR

Query:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP
        +NRG QVISEIIET R+H+FTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRH+I DKK++G MPE YPH+I NNFTT++G+R  NILKH+FP P
Subjt:  MNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVP

Query:  KPDTKRVVTFANQSDYISFRHHIYEK-HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        K D KR+VTF+NQSDYISFR+H+Y+K  GG KSIELKEIGPRFELRLYQ+KLGTV+Q EA+ EWVIRPYM T+KKR F+G
Subjt:  KPDTKRVVTFANQSDYISFRHHIYEK-HGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFLG

AT4G01560.1 Ribosomal RNA processing Brix domain protein

3.0e-38

36.24

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Query:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPR-----THIDDEYAN---ASEVDPKILITTSRDPSAPLTQFAKELK
        H K LE K++ +  +    + ALE G+  P ++  + +   +E    DE    P        ID +  N     E+ PK+L+TT R  S        EL 
Subjt:  HRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPR-----THIDDEYAN---ASEVDPKILITTSRDPSAPLTQFAKELK

Query:  IVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANI
         V PN+    RG   + +I+E     +FT +I+VH +R  PD L+I  LP GPTA+F L N+V R +I++    G      P ++LNNFTT+LG R    
Subjt:  IVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGERTANI

Query:  LKHLFPVPKPD--TKRVVTFANQSDYISFRHHIY--------EKHGGAKSIE--LKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFL
         + LFP P P+   +RVVTF NQ D+I FRHH Y           G  ++I+  L+E GPRF L+L  ++ GT D    + EWV +P M T+++R FL
Subjt:  LKHLFPVPKPD--TKRVVTFANQSDYISFRHHIY--------EKHGGAKSIE--LKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRDFL

Sequences

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CDS sequence

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ATGATTTTCCTTCGCCATCATCTTCATGAGGGATTGAAGATGGAATATTTAACAATAAAAGATCCTTGTATCTTGTGGAAGAATTTAAAACAGAGATATGATCATCAAAA
AACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTCCATGATTTCAAATCAGTAAGTGATTACAACTCCGCGTTATTTAAAATCAGTTCAAAATTAT
TGCTGTGCGGAGAGAAAATTGCTGATGCGGATATGTTGGAGAAGACATTTTCTACATTTCATGCCTCGAATATGCTCCTGCAGCAGCAATATCGAGAGAAAAGTTTTAAA
CAATATTCTAAATTAATTTCATGTCTTCTCGTGGCTGAACAAAATAATGAGCTATTAATGAAGAGCCATGAATCTCGACCAACTAGAACAACACCATTCCCTGAAGTGAA
TGCTGTAAATTTTAGTAATCATGGTCGAGGTCGTGATCGTGACCATGGCAGAGGAAAAAATAGTTATTATTTTCGTGGTGGTCATTCTAATCATCCAAATTTCAAAACAA
CCACCCGAAATGATGATCATAAAGGAAAAGCTCCACAAGATAAGAAAAAATTTAGTAAATTAGCTGAAATTGTCCCTCCGTTAACGATCGTAAGCCTAAGCCTTTCCTTT
TCCCTAAACCCTATACACCAGCCACTTGAACCCTGCCCCGCTTCACGCTGCCGCCACCGCCACCGCACAAACAGTGTTCAGCCCCTAACCCTCGCCGTTGGTGAGATAGC
GCCTTCGCCGCTCATTTTTCAGATTCCTAAGACTCTAGGTGGGGGTTTGGCTCATAGAAAGAGTTTAGAAGGCAAAGAGCGTTTGCTATACGAGAAGAAGCGGAAGATTA
GAGAAGCCCTAGAAGAGGGAAAACCTTTTCCTACTGAACTTCGTAATGAGGAGGTGGCACTTCGTAAAGAAATTGAACTTGAGGATGAGCTCACAGCAGTCCCAAGGACA
CACATCGATGATGAATATGCGAATGCTTCAGAAGTTGATCCTAAAATTTTGATAACTACATCTCGGGATCCAAGCGCACCTTTGACACAGTTTGCAAAGGAATTAAAAAT
TGTTTTCCCCAATGCACAACGAATGAATCGTGGTGGTCAGGTGATCTCAGAGATTATAGAGACCTGCCGTGCTCATGAATTTACAGATGTTATTTTAGTTCATGAACATC
GTGGTGTGCCAGATGGTTTGATTATCAGCCATCTTCCTTTTGGTCCAACGGCATATTTTGGATTGTTGAATGTGGTTACAAGACATGAAATTAGGGACAAAAAAGCTATG
GGAACAATGCCTGAGGCCTATCCGCACATAATTTTGAACAATTTTACCACAAAGTTGGGTGAAAGGACGGCCAATATCTTAAAGCATCTATTTCCTGTGCCAAAGCCAGA
TACCAAACGTGTGGTTACTTTTGCTAATCAGTCCGACTATATTTCATTCAGGCATCATATTTATGAGAAGCATGGAGGTGCCAAATCAATTGAGCTGAAGGAGATTGGTC
CACGGTTTGAATTGCGACTGTACCAGATAAAGTTAGGAACTGTGGACCAAACCGAAGCTCAGAATGAATGGGTGATCAGACCATACATGAGAACAACCAAGAAGCGTGAT
TTCCTTGGTGTTTGA

mRNA sequence

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Protein sequence

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MIFLRHHLHEGLKMEYLTIKDPCILWKNLKQRYDHQKTVILPKARYEWMHLRLHDFKSVSDYNSALFKISSKLLLCGEKIADADMLEKTFSTFHASNMLLQQQYREKSFK
QYSKLISCLLVAEQNNELLMKSHESRPTRTTPFPEVNAVNFSNHGRGRDRDHGRGKNSYYFRGGHSNHPNFKTTTRNDDHKGKAPQDKKKFSKLAEIVPPLTIVSLSLSF
SLNPIHQPLEPCPASRCRHRHRTNSVQPLTLAVGEIAPSPLIFQIPKTLGGGLAHRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEVALRKEIELEDELTAVPRT
HIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAM
GTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMRTTKKRD
FLGV

Clc01G08080 (gene) of Watermelon (cordophanus) v2 genome