; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G08300 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G08300
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S27
Genome locationClcChr01:8505049..8509640
RNA-Seq ExpressionClc01G08300
SyntenyClc01G08300
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG1853313.1 unnamed protein product [Musa acuminata subsp. malaccensis]2.2e-1657.89Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVIDDAVPCFFL
        +VL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFM   C   FN+    +  +LLW+A TAR   ASR   V  SP+ AL  E+ I+     FFL
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVIDDAVPCFFL

MBA0796973.1 hypothetical protein [Gossypium harknessii]3.6e-1459.52Show/hide
Query:  FLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGER
        F VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFM             ATLK  WY    R  + +++E+ LDS K AL G R
Subjt:  FLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGER

QHO31017.1 40S ribosomal protein [Arachis hypogaea]6.1e-1470.59Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRR
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFF    C    +P  SATL+  WYA TAR+  ASR+
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRR

RRT50958.1 hypothetical protein B296_00051407 [Ensete ventricosum]2.7e-1457.95Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSS--ATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID
        +VL ND+DLLNPPAELEKR+HKLKRLVQSPNSFFMV    +  +  SS   T +L W+  TAR   ASR      SPK AL GER  +
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSS--ATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID

RXH79955.1 hypothetical protein DVH24_041102 [Malus domestica]2.2e-1664.13Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM---VFFCFYFNL----PQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID
        VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM      CF   +    P  S T K LW AVTARR  AS  EDV  SPKVA   ER  D
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM---VFFCFYFNL----PQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID

TrEMBL top hitse value%identityAlignment
A0A426YGV6 Uncharacterized protein1.3e-1457.95Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSS--ATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID
        +VL ND+DLLNPPAELEKR+HKLKRLVQSPNSFFMV    +  +  SS   T +L W+  TAR   ASR      SPK AL GER  +
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSS--ATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID

A0A498HR82 Uncharacterized protein1.2e-1260.47Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQ-SSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID
        VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM          Q  S T K LW   TAR+  AS  E    SP+VAL  ER  D
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQ-SSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID

A0A498ID30 Uncharacterized protein1.1e-1664.13Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM---VFFCFYFNL----PQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID
        VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM      CF   +    P  S T K LW AVTARR  AS  EDV  SPKVA   ER  D
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM---VFFCFYFNL----PQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVID

A0A7J9GHB9 Uncharacterized protein (Fragment)1.7e-1459.52Show/hide
Query:  FLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGER
        F VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFM             ATLK  WY    R  + +++E+ LDS K AL G R
Subjt:  FLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGER

M0RHJ7 Uncharacterized protein1.1e-1657.89Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVIDDAVPCFFL
        +VL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFM   C   FN+    +  +LLW+A TAR   ASR   V  SP+ AL  E+ I+     FFL
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVIDDAVPCFFL

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-17.7e-1289.74Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

P47903 40S ribosomal protein S272.7e-0979.49Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VL +DIDLLNPPAELEK KHK KRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

Q8L953 40S ribosomal protein S27-31.1e-1084.62Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

Q96564 40S ribosomal protein S272.5e-1084.62Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLLNPPAELEK KHK KRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

Q9M2F1 40S ribosomal protein S27-27.7e-1289.74Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein5.5e-1389.74Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

AT3G61110.1 ribosomal protein S275.5e-1389.74Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

AT3G61111.1 Zinc-binding ribosomal protein family protein2.1e-1284.62Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM+  C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC

AT5G47930.1 Zinc-binding ribosomal protein family protein7.9e-1284.62Show/hide
Query:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC
        +VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFM   C
Subjt:  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCCCTTCACTTTGTTCTCTTTCCCTTATTGAAAACATCAATATCGACCTCACCATCGCTGCTGCCACAAAAGCAGTTCTTCATGTCGTCACAACTATA
TCTTTTGCAGTTGTCAATCAACAGGTATTCCTCGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGT
CTTGTGCAATCACCCAACTCATTCTTCATGGTATTCTTTTGCTTCTATTTCAATTTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCC
AGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTG
GGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTA
GAGTTATCTGGTTTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCCCTTCACTTTGTTCTCTTTCCCTTATTGAAAACATCAATATCGACCTCACCATCGCTGCTGCCACAAAAGCAGTTCTTCATGTCGTCACAACTATA
TCTTTTGCAGTTGTCAATCAACAGGTATTCCTCGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGT
CTTGTGCAATCACCCAACTCATTCTTCATGGTATTCTTTTGCTTCTATTTCAATTTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCC
AGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTG
GGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTA
GAGTTATCTGGTTTTGTTTAAAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAACTTAACTTTCTTTTATTTACTCTTTATTTTGTTTTGAAG
TTGAATGTG
Protein sequenceShow/hide protein sequence
MSLPSLCSLSLIENINIDLTIAAATKAVLHVVTTISFAVVNQQVFLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTA
RRSYASRREDVLDSPKVALLGERVIDDAVPCFFLLGRNCSLCFDHGYIYFSCTVSDLIMLSLLNRLYLALELSGFV