CuGenDBv2

Gene ID	Clc01G08670
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Transcription initiation factor TFIID subunit 11-like
Genome location	ClcChr01:9002206..9003978
RNA-Seq Expression	Clc01G08670
Synteny	Clc01G08670
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066209.1 acidic repeat-containing protein [Cucumis melo var. makuwa]

4.1e-71

81.5

Show/hide

Query:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAE TNR EE+AFDAKRKPAD C + KEE SNKIQKLEVVEGEESCN VK N ENGDHK SDEQID +SS+V EGK DDGV GA LD        EDEDD
Subjt:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA
        SED EKSSGK A DRKGKGIM D+KGKGKLIEEDDDDDEDS DDGSD DSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFA+DL NDDDDSSDSDA
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA

XP_004150738.1 nucleolin [Cucumis sativus]

1.8e-71

81.5

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Query:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAE TNR EE+AFDAKRKP D C + KEERSNKIQKLEVVEGEESCN V  N ENGDHK SDEQ+D ISS+V EGK DDGV GA LD        EDEDD
Subjt:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA
        SED EKSS K AEDRKGKGIM D+KGKGKLIEEDDDDDEDS DDGS  DSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFA+DLGNDDDDSSDSDA
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA

XP_022939215.1 prostatic spermine-binding protein isoform X2 [Cucurbita moschata]

5.9e-70

81.77

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Query:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADL--------DEDEDD
        MAET ++REE AFDAKRKPADPCCEAKEERSNKIQKLEVVEG E CNDVKKNG+NGDHK+ D+QID ISS+ AEGK DDGVL AD+        D+DEDD
Subjt:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADL--------DEDEDD

Query:  SEDGEKSSGKAA-EDRKGKGIMTDEKGKGKLIEE--DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD
         E+GEKSSGKAA EDRKGKGIM D+KGKGKLIEE  DDDDDEDS DDGS+FD+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFA+DLGN+DDDSSD
Subjt:  SEDGEKSSGKAA-EDRKGKGIMTDEKGKGKLIEE--DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD

Query:  SDA
        SDA
Subjt:  SDA

XP_022992871.1 nucleolin-like [Cucurbita maxima]

2.0e-70

81.28

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Query:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAET ++REE AFDAKRKPADPCCEAKEERSNKIQKLEVVEG E CNDVKKNG+NGDHK+ DEQID ISS+ AEGK DDGV  AD+D         DEDD
Subjt:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEE---DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD
         E+GEKSSGKAA+DRKGKGIM D+KGKGKLIEE   DDDDDEDS DDGS+FD+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFA+DLGN+DDDSSD
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEE---DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD

Query:  SDA
        SDA
Subjt:  SDA

XP_038906649.1 pheromone-processing carboxypeptidase KEX1 [Benincasa hispida]

4.8e-80

86.5

Show/hide

Query:  MAETTNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGD-HKESDEQIDKISSSVAEGKYDDGVLGADL--------DEDEDD
        MAETT  EE+AFDAKRKPADPCCEAKEERSNK+QKLEVVEGEESCNDVKKNGENGD HKE+DE ID +SSSVAEGK DDGV+GADL        DEDEDD
Subjt:  MAETTNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGD-HKESDEQIDKISSSVAEGKYDDGVLGADL--------DEDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA
        SE+GEKSSGKAAEDRKGKGIM D+KGKGKLIEEDDDDDEDS DDGS+ DSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFA+DLGNDDDDSSDSDA
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMR8 Uncharacterized protein

8.8e-72

81.5

Show/hide

Query:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAE TNR EE+AFDAKRKP D C + KEERSNKIQKLEVVEGEESCN V  N ENGDHK SDEQ+D ISS+V EGK DDGV GA LD        EDEDD
Subjt:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA
        SED EKSS K AEDRKGKGIM D+KGKGKLIEEDDDDDEDS DDGS  DSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFA+DLGNDDDDSSDSDA
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA

A0A1S3CIW7 acidic repeat-containing protein

6.3e-70

80.69

Show/hide

Query:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAE TNR EE+AFDAKRKPAD C + KEE SNKIQKLEVVEGEESCN VK N ENGDHK SDEQID +SS+V EGK DDGV GA LD        EDEDD
Subjt:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEE--DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDS
        SED EKSSGK A DRKGKGIM D+KGKGKLIEE  DDDDDEDS DDGSD DSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFA+DL NDDDDSSDS
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEE--DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDS

Query:  DA
        DA
Subjt:  DA

A0A5D3E1E7 Acidic repeat-containing protein

2.0e-71

81.5

Show/hide

Query:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAE TNR EE+AFDAKRKPAD C + KEE SNKIQKLEVVEGEESCN VK N ENGDHK SDEQID +SS+V EGK DDGV GA LD        EDEDD
Subjt:  MAETTNR-EEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA
        SED EKSSGK A DRKGKGIM D+KGKGKLIEEDDDDDEDS DDGSD DSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFA+DL NDDDDSSDSDA
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSDSDA

A0A6J1FM23 prostatic spermine-binding protein isoform X2

2.8e-70

81.77

Show/hide

Query:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADL--------DEDEDD
        MAET ++REE AFDAKRKPADPCCEAKEERSNKIQKLEVVEG E CNDVKKNG+NGDHK+ D+QID ISS+ AEGK DDGVL AD+        D+DEDD
Subjt:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADL--------DEDEDD

Query:  SEDGEKSSGKAA-EDRKGKGIMTDEKGKGKLIEE--DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD
         E+GEKSSGKAA EDRKGKGIM D+KGKGKLIEE  DDDDDEDS DDGS+FD+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFA+DLGN+DDDSSD
Subjt:  SEDGEKSSGKAA-EDRKGKGIMTDEKGKGKLIEE--DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD

Query:  SDA
        SDA
Subjt:  SDA

A0A6J1K0H1 nucleolin-like

9.8e-71

81.28

Show/hide

Query:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD
        MAET ++REE AFDAKRKPADPCCEAKEERSNKIQKLEVVEG E CNDVKKNG+NGDHK+ DEQID ISS+ AEGK DDGV  AD+D         DEDD
Subjt:  MAET-TNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSSVAEGKYDDGVLGADLD--------EDEDD

Query:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEE---DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD
         E+GEKSSGKAA+DRKGKGIM D+KGKGKLIEE   DDDDDEDS DDGS+FD+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFA+DLGN+DDDSSD
Subjt:  SEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEE---DDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGNDDDDSSD

Query:  SDA
        SDA
Subjt:  SDA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12830.1 unknown protein

1.2e-23

40.65

Show/hide

Query:  MAETTNREEIAFDAKRKPADPCCEAKEERSNKIQKL--EVVEGEESCNDVKKNGE------NGDHKESDEQIDKISSSVAEGKYDDGVLG------ADLD
        MA+  N+++ +F  KRK +D  C+ ++  +NK QKL   +   +    D + NG       N   +E+      + S  A  + + GV+G         D
Subjt:  MAETTNREEIAFDAKRKPADPCCEAKEERSNKIQKL--EVVEGEESCNDVKKNGE------NGDHKESDEQIDKISSSVAEGKYDDGVLG------ADLD

Query:  EDEDDSEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSD---FD-SEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGN-
        E++++ +D E+   +   DRKGKGI  ++KGKGK+IE ++ DDED  DD  D   FD  +ESD SDDPLAEVDLDNILPSRTRRR+  PGV+  ++  N 
Subjt:  EDEDDSEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSD---FD-SEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDLGN-

Query:  ----DDDDSSDSDA
            +DD+SSDSDA
Subjt:  ----DDDDSSDSDA

Sequences

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CDS sequence

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ATGAGGGAAAAGCATCAAACAGACGAAGGCCGCCCGACCGTCATCCCCAATAGCTTTAAAACCGATGCATCGGTGACGGGCGTCGGTTTCGAAGCTTCAAAGGTAGGGTT
TTGCGCCACATTAATGGCAGAAACTACCAATAGAGAGGAGATAGCATTTGATGCGAAGCGGAAACCTGCTGATCCTTGCTGCGAAGCCAAAGAGGAGCGTTCGAACAAAA
TTCAGAAGCTCGAAGTGGTTGAGGGTGAAGAATCCTGTAATGATGTGAAGAAGAATGGTGAGAATGGTGATCATAAGGAAAGTGATGAACAGATTGATAAAATTTCTTCT
TCGGTTGCGGAAGGGAAATATGACGATGGAGTTCTTGGAGCTGATTTGGATGAGGATGAAGACGACAGTGAAGATGGTGAAAAGTCGAGTGGAAAAGCGGCTGAGGATCG
GAAGGGGAAAGGTATTATGACGGATGAGAAAGGAAAAGGGAAATTGATAGAGGAAGACGATGACGACGATGAAGATTCCGGTGACGATGGAAGCGATTTTGATTCTGAAG
AGAGTGATTTGTCGGATGATCCACTTGCGGAGGTCGATTTGGACAACATTCTTCCTTCAAGGACGCGGCGGCGAACGGTGCATCCTGGAGTTTATTTTGCGTCGGATCTG
GGGAACGATGACGATGATAGCAGTGATAGCGATGCTTGA

mRNA sequence

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Protein sequence

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MREKHQTDEGRPTVIPNSFKTDASVTGVGFEASKVGFCATLMAETTNREEIAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS
SVAEGKYDDGVLGADLDEDEDDSEDGEKSSGKAAEDRKGKGIMTDEKGKGKLIEEDDDDDEDSGDDGSDFDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFASDL
GNDDDDSSDSDA

Clc01G08670 (gene) of Watermelon (cordophanus) v2 genome