; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G09170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr01:10100052..10101286
RNA-Seq ExpressionClc01G09170
SyntenyClc01G09170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]5.7e-0570.59Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        RLPTQYAYH GDK+EWG  + I QD IH FP LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]7.5e-0567.65Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        +LPTQYAYH GDK++WG  +II QDEIH F  LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.4e-0556.52Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG-FGQADATRIEH
        +L TQYAYH GDK+EWG  +II QD IH FP LG F     T ++H
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG-FGQADATRIEH
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.2e-0673.53Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        RLPTQYAYH GDK+EWG  +II QD IH FP LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
TYK19425.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-0570.59Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        RLPTQYAYH GDK+EWG  +I  QD IH FP LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class2.8e-0570.59Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        RLPTQYAYH GDK+EWG  + I QD IH FP LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
A0A5A7THR9 Uncharacterized protein3.6e-0567.65Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        +LPTQYAYH GDK++WG  +II QDEIH F  LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
A0A5A7VFG5 Ty1-copia retrotransposon protein2.5e-0673.53Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        RLPTQYAYH GDK+EWG  +II QD IH FP LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
A0A5D3C1P5 Gag-pol polyprotein2.1e-0556.52Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG-FGQADATRIEH
        +L TQYAYH GDK+EWG  +II QD IH FP LG F     T ++H
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG-FGQADATRIEH
A0A5D3D7C0 Gag/pol protein1.6e-0570.59Show/hide
Query:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
        RLPTQYAYH GDK+EWG  +I  QD IH FP LG
Subjt:  RLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGCGACCGTTTGCCGACTCAATATGCCTACCATCTTGGGGACAAGTCCGAGTGGGGAACTAGGGACATAATTATACAAGATGAAATTCACTTATTCCCATT
TTTAGGCTTTGGACAAGCGGACGCTACACGGATAGAACATTTTGGCCCTCGAGGTTTTCCTCGAAGAATGAGTCGTTCAACTCCTTTGGTTGATCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGCGACCGTTTGCCGACTCAATATGCCTACCATCTTGGGGACAAGTCCGAGTGGGGAACTAGGGACATAATTATACAAGATGAAATTCACTTATTCCCATT
TTTAGGCTTTGGACAAGCGGACGCTACACGGATAGAACATTTTGGCCCTCGAGGTTTTCCTCGAAGAATGAGTCGTTCAACTCCTTTGGTTGATCACTAA
Protein sequenceShow/hide protein sequence
MGESDRLPTQYAYHLGDKSEWGTRDIIIQDEIHLFPFLGFGQADATRIEHFGPRGFPRRMSRSTPLVDH