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Clc01G09280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr01:10214007..10215740
RNA-Seq ExpressionClc01G09280
SyntenyClc01G09280
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006412 - translation (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031721.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-4658.15Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  +VKR ++++G W G  DFV+VKMDDFD VLG+KFLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLKKGL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP++S E   + V K+I  VLEK +            PR       + V  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

KAA0045584.1 polyprotein [Cucumis melo var. makuwa]5.6e-4657.61Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  +VKR+++++G W G  DFV+VKMDDFD VLG++FLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLK+GL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP++S E   + V K+I  VLEK +            PR       + V  AKP VK+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

KAA0052270.1 uncharacterized protein E6C27_scaffold207G00960 [Cucumis melo var. makuwa]3.3e-4657.61Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MKVVNSAALPI  +VKR ++++G+W G  DFV+VKMDDFD VLG++FLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLKKGL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEK-------DQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP+ S E   + V K+I  VLEK         P++           + V  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEK-------DQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

TYK25585.1 uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa]5.6e-4657.61Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  +VKR ++++G W G  DFV+VKMDDFD VLG++FLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLKKGL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP++S E   + V K+I  VLEK +            PR       + V  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]6.6e-4759.24Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  V KRV VK+G W G  DFV+V+MDDFD VLGIKFLLEHKVIPMPLAKCLV+T S P +VQT +KQP+G++MI  LQLKKG+  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLE-------KDQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIPV      E++V ++IQ VLE        + P+N           + +  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLE-------KDQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

TrEMBL top hitse value%identityAlignment
A0A5A7SQA2 Reverse transcriptase1.6e-4658.15Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  +VKR ++++G W G  DFV+VKMDDFD VLG+KFLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLKKGL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP++S E   + V K+I  VLEK +            PR       + V  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

A0A5A7TR40 Polyprotein2.7e-4657.61Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  +VKR+++++G W G  DFV+VKMDDFD VLG++FLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLK+GL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP++S E   + V K+I  VLEK +            PR       + V  AKP VK+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

A0A5A7UAP7 Reverse transcriptase domain-containing protein1.6e-4657.61Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MKVVNSAALPI  +VKR ++++G+W G  DFV+VKMDDFD VLG++FLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLKKGL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEK-------DQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP+ S E   + V K+I  VLEK         P++           + V  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEK-------DQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

A0A5D3DQ20 Retrotrans_gag domain-containing protein2.7e-4657.61Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  +VKR ++++G W G  DFV+VKMDDFD VLG++FLLEH+VIPMPLAKCLV+TG TP++VQT ++QP+G++MI  +QLKKGL  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIP++S E   + V K+I  VLEK +            PR       + V  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLEKDQ------------PRN------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

A0A6J1DLQ6 uncharacterized protein LOC1110223203.2e-4759.24Show/hide
Query:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV
        MK VNSAALPI  V KRV VK+G W G  DFV+V+MDDFD VLGIKFLLEHKVIPMPLAKCLV+T S P +VQT +KQP+G++MI  LQLKKG+  D+P 
Subjt:  MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPV

Query:  FMAIPVESVETKEKIVLKDIQSVLE-------KDQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG
        FMAIPV      E++V ++IQ VLE        + P+N           + +  AKP  K+AY MAPPELAELRKQLDELL+ G
Subjt:  FMAIPVESVETKEKIVLKDIQSVLE-------KDQPRN-----------QTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTCGTTAACTCTGCAGCCTTACCCATCACGAGAGTAGTAAAAAGAGTAGTGGTTAAGATGGGAGATTGGAGAGGACATGCCGATTTCGTGCTCGTCAAGATGGA
TGATTTTGATGCAGTATTAGGGATAAAATTCTTGCTCGAACACAAGGTGATACCAATGCCATTGGCAAAATGTTTAGTAATGACAGGGTCCACTCCCACTATTGTTCAGA
CTTACGTCAAACAACCAAATGGGATAAGGATGATCTTGACCCTCCAGCTTAAGAAGGGTCTCATACATGACAAACCTGTGTTCATGGCCATCCCTGTCGAGTCAGTTGAA
ACGAAAGAAAAGATCGTTCTTAAAGACATTCAGTCTGTCTTGGAAAAGGATCAACCACGAAATCAAACTGTTACTAGGGCAAAGCCGCTTGTGAAGGATGCCTATTATAT
GGCGCCCCCAGAATTAGCAGAACTTCGGAAGCAACTAGATGAGTTGTTGAGCTTCGGGCAACGCAGTCAAGAGCGTCGTTACGCTGCCCTTGGTGCTTTCAACCCGAGAG
CATCAAAATCTGGAAGGCAGGCCAGCGTTGCCGTTTTGGAGAAGCGTCGCTGCGCTATGATGGGGCATCACTGTGCTTGGAGAGCGCAACGATGCCAACATTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTCGTTAACTCTGCAGCCTTACCCATCACGAGAGTAGTAAAAAGAGTAGTGGTTAAGATGGGAGATTGGAGAGGACATGCCGATTTCGTGCTCGTCAAGATGGA
TGATTTTGATGCAGTATTAGGGATAAAATTCTTGCTCGAACACAAGGTGATACCAATGCCATTGGCAAAATGTTTAGTAATGACAGGGTCCACTCCCACTATTGTTCAGA
CTTACGTCAAACAACCAAATGGGATAAGGATGATCTTGACCCTCCAGCTTAAGAAGGGTCTCATACATGACAAACCTGTGTTCATGGCCATCCCTGTCGAGTCAGTTGAA
ACGAAAGAAAAGATCGTTCTTAAAGACATTCAGTCTGTCTTGGAAAAGGATCAACCACGAAATCAAACTGTTACTAGGGCAAAGCCGCTTGTGAAGGATGCCTATTATAT
GGCGCCCCCAGAATTAGCAGAACTTCGGAAGCAACTAGATGAGTTGTTGAGCTTCGGGCAACGCAGTCAAGAGCGTCGTTACGCTGCCCTTGGTGCTTTCAACCCGAGAG
CATCAAAATCTGGAAGGCAGGCCAGCGTTGCCGTTTTGGAGAAGCGTCGCTGCGCTATGATGGGGCATCACTGTGCTTGGAGAGCGCAACGATGCCAACATTCCTAA
Protein sequenceShow/hide protein sequence
MKVVNSAALPITRVVKRVVVKMGDWRGHADFVLVKMDDFDAVLGIKFLLEHKVIPMPLAKCLVMTGSTPTIVQTYVKQPNGIRMILTLQLKKGLIHDKPVFMAIPVESVE
TKEKIVLKDIQSVLEKDQPRNQTVTRAKPLVKDAYYMAPPELAELRKQLDELLSFGQRSQERRYAALGAFNPRASKSGRQASVAVLEKRRCAMMGHHCAWRAQRCQHS