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Clc01G09455 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09455
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationClcChr01:10532107..10532484
RNA-Seq ExpressionClc01G09455
SyntenyClc01G09455
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW39348.1 Protein ORANGE, chloroplastic [Vitis vinifera]4.6e-0544.62Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNM
        G WKA   L  L    +   +GNG  +SFW D W  T  PL ++F +LFAL++AKEA V +LW +
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNM

RVW73577.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]1.8e-0439.29Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNML-EGVGISNFAGISMNWRP
        G WK   +   LV   ++  +GNG  + FW D W     PL ++F +LFALS+ KEA V ++W+ L EGVG     G    W P
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNML-EGVGISNFAGISMNWRP

RVW76081.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.9e-0444.29Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG
        G WKA     L +   V   +GNG  + FW D W     PL+ +F +LFA+SLAK+A V E+WN  +GVG
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG

RVW94842.1 putative ribonuclease H protein [Vitis vinifera]3.0e-0440Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG
        G WK       +V   +V  +GNG  I FW D W     PL ++F +LFAL+++K+A V ++W   EGVG
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG

RVX20955.1 putative ribonuclease H protein [Vitis vinifera]3.0e-0440.96Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNML-EGVG-ISNFAGISMNW
        G WKA      L+D  V   LGNG  + FW D W     PL  +F +LF++S++K A V E+WN + +GVG I  FA    +W
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNML-EGVG-ISNFAGISMNW

TrEMBL top hitse value%identityAlignment
A0A438DVP2 Protein ORANGE, chloroplastic2.3e-0544.62Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNM
        G WKA   L  L    +   +GNG  +SFW D W  T  PL ++F +LFAL++AKEA V +LW +
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNM

A0A438GMZ4 Retrovirus-related Pol polyprotein from transposon RE28.6e-0539.29Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNML-EGVGISNFAGISMNWRP
        G WK   +   LV   ++  +GNG  + FW D W     PL ++F +LFALS+ KEA V ++W+ L EGVG     G    W P
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNML-EGVGISNFAGISMNWRP

A0A438GV49 Transposon TX1 uncharacterized 149 kDa protein1.9e-0444.29Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG
        G WKA     L +   V   +GNG  + FW D W     PL+ +F +LFA+SLAK+A V E+WN  +GVG
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG

A0A438HBJ9 Putative ribonuclease H protein2.5e-0442.86Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG
        G WKA     L +   +   +GNG  + FW D W   H PL+ +F +LFA+S AK+A V E+WN  +GVG
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG

A0A438IDN6 Putative ribonuclease H protein1.5e-0440Show/hide
Query:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG
        G WK       +V   +V  +GNG  I FW D W     PL ++F +LFAL+++K+A V ++W   EGVG
Subjt:  GSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACTGCCAAAGGCTCATGGAAAGCCCGGTCTATCCTCCAACTATTGGTGGATCAGCATGTTGTTGTTACCCTTGGAAATGGGTGTTCTATCTCCTTTTGGCTCGA
CACATGGGTAAGCACCCACCCCCCTTTACATATAGCCTTCCACAACTTATTTGCTCTTTCCCTTGCCAAGGAGGCCATGGTCTTCGAGCTATGGAACATGTTGGAGGGTG
TTGGAATCTCCAACTTTGCAGGCATCTCAATGAATTGGAGACCGATGAATAGGCTGAGCTCTCACTTTTGCTTACCAATCATCAACCCGTACAATCCAATGCCAAGTGGT
AGCTTGCTTACTTTTGCTTACCAATCATCAACCCCTACAATCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACTGCCAAAGGCTCATGGAAAGCCCGGTCTATCCTCCAACTATTGGTGGATCAGCATGTTGTTGTTACCCTTGGAAATGGGTGTTCTATCTCCTTTTGGCTCGA
CACATGGGTAAGCACCCACCCCCCTTTACATATAGCCTTCCACAACTTATTTGCTCTTTCCCTTGCCAAGGAGGCCATGGTCTTCGAGCTATGGAACATGTTGGAGGGTG
TTGGAATCTCCAACTTTGCAGGCATCTCAATGAATTGGAGACCGATGAATAGGCTGAGCTCTCACTTTTGCTTACCAATCATCAACCCGTACAATCCAATGCCAAGTGGT
AGCTTGCTTACTTTTGCTTACCAATCATCAACCCCTACAATCCAATGA
Protein sequenceShow/hide protein sequence
MSTAKGSWKARSILQLLVDQHVVVTLGNGCSISFWLDTWVSTHPPLHIAFHNLFALSLAKEAMVFELWNMLEGVGISNFAGISMNWRPMNRLSSHFCLPIINPYNPMPSG
SLLTFAYQSSTPTIQ