CuGenDBv2

Gene ID	Clc01G09565
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr01:10793138..10793494
RNA-Seq Expression	Clc01G09565
Synteny	Clc01G09565
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEK71468.1 hypothetical chloroplast RF2 [Crossosoma californicum]

1.8e-39

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

QHB76007.1 hypothetical chloroplast RF21 [Cucumis melo subsp. melo]

1.8e-39

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

QHN53497.1 hypothetical chloroplast RF21 [Oreocnide frutescens]

1.8e-39

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKK KP LLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

XP_022975222.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 [Cucurbita maxima]

2.3e-39

90.53

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Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

YP_010127790.1 Ycf2 [Artocarpus petelotii]

3.6e-40

91.58

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Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKGL+D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

TrEMBL top hits

e value

%identity

Alignment

A0A6B9M616 Protein Ycf2

8.6e-40

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

A0A6B9TUP2 Protein Ycf2

8.6e-40

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKK KP LLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

A0A7T1X3U3 Ycf2

1.7e-40

91.58

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKGL+D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

A0A7T2HD08 Uncharacterized protein

1.1e-39

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

G0YCZ1 Protein Ycf2

8.6e-40

90.53

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

SwissProt top hits

e value

%identity

Alignment

A4QJF8 Protein Ycf2

7.5e-41

87.37

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFLFNKIPKWMIDSFHTR NR KSFDNT SYFSM+S D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

A4QJP2 Protein Ycf2

7.5e-41

87.37

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFLFNKIPKWMIDSFHTR NR KSFDNT SYFSM+S D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

B1A978 Protein Ycf2

5.7e-41

88.42

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFLFNKIPKWMIDSFHTR NR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

Q09WV7 Protein Ycf2

1.5e-41

89.47

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDHDTSQKSKFLING TISPFLFNKIPKWMIDSFHTR NR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

Q49KT6 Protein Ycf2

9.7e-41

87.37

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD
        SEIH+YELKG +D+L NQLLESIGLQIVHLKK KPLLLDDHDTSQKSK LING TISPF FNKIPKWMIDSFHTRNNR KSFDNT SYFSMIS D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.9e-40

85.42

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNT-SSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFLFNKIPKWMIDSFHTR NR KSFDNT S+YFS++S D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNT-SSYFSMISDD

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.9e-40

85.42

Show/hide

Query:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNT-SSYFSMISDD
        SEIHIYELKG +D+L NQLLESIGLQIVHLKKLKP LLDDH+TSQKSKFLING TISPFLFNKIPKWMIDSFHTR NR KSFDNT S+YFS++S D
Subjt:  SEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNT-SSYFSMISDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTTCTCTTTCTTCCGAGATCCACATCTATGAATTGAAAGGTCTGAGTGATAAACTCTACAATCAGTTATTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAA
ATTGAAACCCCTCTTATTAGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGAAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGA
TTGACTCATTCCATACTAGAAATAATCGCATAAAATCCTTTGATAACACTTCTTCCTATTTCTCAATGATATCCGATGATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSLSSEIHIYELKGLSDKLYNQLLESIGLQIVHLKKLKPLLLDDHDTSQKSKFLINGETISPFLFNKIPKWMIDSFHTRNNRIKSFDNTSSYFSMISDD

Clc01G09565 (gene) of Watermelon (cordophanus) v2 genome