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Clc01G09825 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09825
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZf-CCHC domain-containing protein
Genome locationClcChr01:11338595..11341801
RNA-Seq ExpressionClc01G09825
SyntenyClc01G09825
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033794.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.4e-0949.25Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDNLSC
        K+ N Y  P+L KCF CG+S HLSNNCP R+TIAL +E++ +    +   EE  +F+E D GD +SC
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDNLSC

KAA0040480.1 hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa]1.3e-1052.17Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEED--TLAPESKEDLLEEGTDFLEPDKGDNLSC
        K+ N Y +P+L+KCF CG+SGHLSNNCP R+TIALA E+  +++ + KE+  +E   F+E D GD +SC
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEED--TLAPESKEDLLEEGTDFLEPDKGDNLSC

KAA0059834.1 uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa]2.9e-1051.35Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALA--EEDTLAPESKEDLLEEGTDFLEPDKGDNLSCRYTVQ
        K+ N Y +P+LEKCF CG+SGHLSNNCP R TI+LA  E ++++ + KE+  EE  +F+E D GD +S  Y +Q
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALA--EEDTLAPESKEDLLEEGTDFLEPDKGDNLSCRYTVQ

PON83156.1 Zinc finger, CCHC-type [Trema orientale]8.4e-1047.3Show/hide
Query:  NIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPES-KEDLLEEGTDFLEPDKGDNLSC
        N  +   NS+PY +P L KCF C + GHLSNNCPNRR+I L +ED    E   E+ + EG +F E D+G+ ++C
Subjt:  NIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPES-KEDLLEEGTDFLEPDKGDNLSC

XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]1.1e-0949.33Show/hide
Query:  TKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDN---LSCRYTV
        +KN N Y +P+L KCF CG+ GHLSN+CP R+TIALAEE+   P   E    E T+ +E D+GD    LS +Y++
Subjt:  TKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDN---LSCRYTV

TrEMBL top hitse value%identityAlignment
A0A2P5EC93 Zinc finger, CCHC-type4.1e-1047.3Show/hide
Query:  NIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPES-KEDLLEEGTDFLEPDKGDNLSC
        N  +   NS+PY +P L KCF C + GHLSNNCPNRR+I L +ED    E   E+ + EG +F E D+G+ ++C
Subjt:  NIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPES-KEDLLEEGTDFLEPDKGDNLSC

A0A5A7SRH4 Zf-CCHC domain-containing protein7.0e-1049.25Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDNLSC
        K+ N Y  P+L KCF CG+S HLSNNCP R+TIAL +E++ +    +   EE  +F+E D GD +SC
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDNLSC

A0A5A7T256 Reverse transcriptase9.1e-1052.94Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAE-EDTLAPESKEDLLEEGTDFLEPDKGDNLSC
        K  N Y +P+L KCF CG+ GHLSNNC  R+TIALAE EDT    +  +  EE T+ +E D GD +SC
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAE-EDTLAPESKEDLLEEGTDFLEPDKGDNLSC

A0A5A7UXS4 CCHC-type domain-containing protein1.4e-1051.35Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALA--EEDTLAPESKEDLLEEGTDFLEPDKGDNLSCRYTVQ
        K+ N Y +P+LEKCF CG+SGHLSNNCP R TI+LA  E ++++ + KE+  EE  +F+E D GD +S  Y +Q
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALA--EEDTLAPESKEDLLEEGTDFLEPDKGDNLSCRYTVQ

A0A5D3DJB8 CCHC-type domain-containing protein6.3e-1152.17Show/hide
Query:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEED--TLAPESKEDLLEEGTDFLEPDKGDNLSC
        K+ N Y +P+L+KCF CG+SGHLSNNCP R+TIALA E+  +++ + KE+  +E   F+E D GD +SC
Subjt:  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEED--TLAPESKEDLLEEGTDFLEPDKGDNLSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAAT
AATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAA
AATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTG
TTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGAAATTCTCTGCACCAAGCAG
ATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAAT
AATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAA
AATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTG
TTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGAAATTCTCTGCACCAAGCAG
ATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA
Protein sequenceShow/hide protein sequence
MSSSPKDLLKEVDGIGKLQAAGLNKGHNLCRKIHLQIIKEPPPKQKLTPHLPLEPNIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDL
LEEGTDFLEPDKGDNLSCRYTVQSQSSVSVKFSAPSRSEKGDQREFPNSNINDECING