CuGenDBv2

Gene ID	Clc01G09830
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ribonuclease H2 subunit C
Genome location	ClcChr01:11352910..11356794
RNA-Seq Expression	Clc01G09830
Synteny	Clc01G09830
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

4.7e-68

70.65

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++ENERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST           G+EVDGL+VE AYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA+AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

XP_011660323.1 uncharacterized protein C12B10.15c [Cucumis sativus]

5.5e-69

70.85

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +NERKGEV V  DFDFG+D  ALD+SGKVHQLPC IKFDGPC VSHYFKPKST           G+EVDGL +EEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS
                              GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

2.3e-67

70.15

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST           G+EVDGL+VE AYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA+AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

1.4e-67

70.15

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST           G+EVDGL+V+ AYFRGRKLQGATISLPEGY     
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA ASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

2.6e-71

74.13

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        MN ENERKGEV VDFDF SDSVALDLSGKVHQLPCAIKFDGPCSVS YFKPKST           G+E DGL+VEEAYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYVLG+KSL    ASE  Q+SSPWQVKAKF NITYWNHDTLPSQDD FQRSFHWLTVAQALHKPVTAEDLASASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1A2 Uncharacterized protein

2.7e-69

70.85

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +NERKGEV V  DFDFG+D  ALD+SGKVHQLPC IKFDGPC VSHYFKPKST           G+EVDGL +EEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS
                              GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASASTALKN+S
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

A0A1S3C9A8 uncharacterized protein C12B10.15c

9.5e-67

68.47

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +N RKGE TV  DFDFGSD  ALDLSGK+HQLPC IKFDGPC VSHYFKPKST           G+EVDGL VEEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK
                              GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASAS AL 
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK

Query:  NMS
        N+S
Subjt:  NMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

9.5e-67

68.47

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Query:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS
        MN +N RKGE TV  DFDFGSD  ALDLSGK+HQLPC IKFDGPC VSHYFKPKST           G+EVDGL VEEAYFRGRKLQGATISLPEGYS  
Subjt:  MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVS

Query:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK
                              GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALHKPVTAEDLASAS AL 
Subjt:  RPTSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALK

Query:  NMS
        N+S
Subjt:  NMS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.1e-67

70.15

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST           G+EVDGL+VE AYFRGRKLQGATISLPEGYS    
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA+AS ALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

A0A6J1KH29 uncharacterized protein C12B10.15c

6.6e-68

70.15

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Query:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP
        M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST           G+EVDGL+V+ AYFRGRKLQGATISLPEGY     
Subjt:  MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRP

Query:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM
                            GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQALHKPVTAEDLA ASTALKNM
Subjt:  TSVGYGDCKSSNKQRLNTDTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNM

Query:  S
        S
Subjt:  S

SwissProt top hits

e value

%identity

Alignment

Q10448 Uncharacterized protein C12B10.15c

1.7e-04

26.35

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Query:  KVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKS
        K   LPC I +DGP  V  YF  K  +S             +  +      RGR+L G  + LPE Y+         G     +    N +T        
Subjt:  KVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKS

Query:  LASEHRQDSSPWQVKAKFENITYWNHDTL-PSQDDMFQRS-FHWLTVA
          SE     S W + + FE +  WN D +  S+ D ++R    W+  A
Subjt:  LASEHRQDSSPWQVKAKFENITYWNHDTL-PSQDDMFQRS-FHWLTVA

Q8TDP1 Ribonuclease H2 subunit C

2.0e-05

23.78

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Query:  VHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEG------------YSVSRPTSVGYGDCKSSNKQRLN
        +H LPC +  DGP  V  +F P        +    EG+EV         FRGR L+G  +++P G             S+ +P  +         ++ L 
Subjt:  VHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEG------------YSVSRPTSVGYGDCKSSNKQRLN

Query:  TDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV
         D    +G                  A F   T W  +T+P  D   + +  W ++A A+H  V
Subjt:  TDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.7e-44

51.89

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Query:  TVDFDFGSDSVAL-DLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKS
        T+DF   +D  ++ DLS +VHQLPC I+FDGP  VSHYFKPKS+            +E+DG+  EEA+FRGRKLQGATISLP GYS       G+   ++
Subjt:  TVDFDFGSDSVAL-DLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKS

Query:  SNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKN
        SN   LN +       K  AS   +D+  W+VKAKF N+TYWNHD+LPS+DD F RSFHW ++A+ALHKPV  EDL + S   KN
Subjt:  SNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATACTGAAAACGAGAGGAAAGGGGAAGTAACCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGTGCAAT
TAAATTCGATGGTCCTTGCTCTGTTTCTCATTATTTTAAACCCAAATCCACTGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGATGGTTTGACTG
TTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACAGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGT
TCAAATAAGCAGAGATTGAACACTGATACTGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGA
AAACATTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAAGCATTGCACAAACCTGTAACAGCAG
AAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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AAAAGAAAACGAATTTCGAGCGGGAAAATCTTGGTCGACGATCCATTCTCATTTCTCAGTGCTCAAAAGAGCGGCAAGTGTAGAATCTGAAGTTTAAATGGTCCACTGAA
TTTCCTCGCCAGAAATCCGAAGCATCAACCTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAATTAATCAAATGAATACTGAAAACGAGAGGAAAGGGGAAGTAAC
CGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGTGCAATTAAATTCGATGGTCCTTGCTCTGTTTCTCATTATT
TTAAACCCAAATCCACTGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGATGGTTTGACTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACAG
GGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGTTCAAATAAGCAGAGATTGAACACTGATACTGGCTA
TGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAACATTACATATTGGAACCATGACACCCTACCGT
CACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAAC
ATGAGTTGATTACAATCATGTGCACTGAGAAGAAAACTTCTAATGCTAGAATGATTCCATACTACTTTGATTTGTAATTGGTCACATTATTATCTATTTTACCAATTTAT
TCAATGGGTTTGGCATTTTAAATCATGATGTGGCTTTTTACAACAGTAATATGGAAGAATTTCATACAAGAGTAGTATTAGAAATATGATTTGCATTTTTTTTTCTAAAG
TCATTTAACTTCAAGAGTTGTTCGATAAAACTAACATTTGTGAAGTACAAGA

Protein sequence

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MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKS
SNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

Clc01G09830 (gene) of Watermelon (cordophanus) v2 genome