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Clc01G09860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed DNA polymerase
Genome locationClcChr01:11416734..11423451
RNA-Seq ExpressionClc01G09860
SyntenyClc01G09860
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_014506227.1 uncharacterized protein LOC106765980 [Vigna radiata var. radiata]5.2e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIFLADFV L+ME+DA++ IILGR FLATGRA IDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

XP_014506502.2 uncharacterized protein LOC106766276 [Vigna radiata var. radiata]6.8e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIF ADFV L+ME+DA++ IILGR FLATGRALIDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

XP_014511445.1 uncharacterized protein LOC106770135 [Vigna radiata var. radiata]6.8e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIF ADFV L+ME+DA++ IILGR FLATGRALIDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

XP_017416412.1 PREDICTED: uncharacterized protein LOC108327189 [Vigna angularis]6.8e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIF ADFV L+ME+DA++ IILGR FLATGRALIDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

XP_017420031.1 PREDICTED: uncharacterized protein LOC108330072 [Vigna angularis]6.8e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIF ADFV L+ME+DA++ IILGR FLATGRALIDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

TrEMBL top hitse value%identityAlignment
A0A1S3UJL2 uncharacterized protein LOC1067659802.5e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIFLADFV L+ME+DA++ IILGR FLATGRA IDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

A0A1S3UKE1 uncharacterized protein LOC1067662763.3e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIF ADFV L+ME+DA++ IILGR FLATGRALIDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

A0A1S3UZG8 uncharacterized protein LOC1067701353.3e-0979.17Show/hide
Query:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        GIVEDVLVK+ KFIF ADFV L+ME+DA++ IILGR FLATGRALIDV
Subjt:  GIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

A0A2G9HJD9 RT_RNaseH domain-containing protein3.3e-0967.92Show/hide
Query:  ITLFPGIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        +T   G++ED+LVK+ KFIFLADF+ L+ME D+EI IILGR FLATGR LIDV
Subjt:  ITLFPGIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

A0A2G9IBE4 Uncharacterized protein4.3e-0969.81Show/hide
Query:  ITLFPGIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV
        +T   G++ED+LVK+ KFIFLADFV L+ME D+EI IILGR FLATGR LIDV
Subjt:  ITLFPGIVEDVLVKLHKFIFLADFVKLNMEKDAEISIILGRTFLATGRALIDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAGGTTGTTCAATGAAAGGCATGTGCCTTGTGGTGGTCATGATGAGTGTGGTTGTCAATGAAACTCAAATGGTAGAGGCAGTGAGATGCGAGGAAAAAGAACT
AAGGCCATGTCTTTTCTCGTTGGTGGAGCCATCGTCAACTTGTTGCAACAAGCTGAGCCACCAAGAGAGTGTATGTGATGTGTCTTGCTTCGTGAGGGATGCGTCCATGG
TGAGCTTGGTTGAAGATGTTGATGCATTGCTTGTTGGGCAAGTTGGGCTATGCATCCATGAGTTGGATACGTTGGTTGAGCGTGCCTATGCGAGGATTGCTGCACATTTG
AGGACACGGAGAAGGCATGTGGGTAGTTGGGATATGAAAATGGTTCCCAATGCTGAAGGACATGGAGAAGGCATATGGGTAGCCGGGGGTCGGCTATGCATTGAGGACAA
ACATAATGTCCAAGGTGAATGCGGCTTCCACAGATTAGATGACACGTTCATGGTGGACCTTGCGTCCAAGAGAGGGCAACACATCCGAAAGGGAAAGTTAGAACGCTGTG
TTCAGAAAGCTCGGAAAGAGGAAATAGAGCATAGGAAGAAGAAGGATTCTTTGGCTAAGTACATGCACCCGAGGCTCAGGGACATGGAGAAGGCCAAAGGGGTAGCCGTT
CTATTAAAATGGGACCCCAATGCTCAGGGACTCGTAGAAGGCATTGTGGGCGGCTCGGAATATAAAGGTACCCAATGCTCAGGGACTCGTAGAAGGCATATGGGTAGCAT
GACAGTTTTCGTTGCCGATCGAAGTCGAGGTTTGTCAAGAGCATTTGGATGGGAAGGCCCCGGTACTGAAGAACTTGGAGAAGGTGACGATCAAGTTTTATGGTTGGTAG
TGGATGCTGTAAGAGGGTCGGTGTTTGTTGTCATCACACTTTTTCCTGGCATTGTGGAGGACGTATTGGTTAAGCTGCACAAGTTTATCTTCCTGGCAGATTTTGTGAAA
CTAAACATGGAGAAAGATGCTGAAATTTCCATAATTCTTGGAAGAACTTTCTTGGCCACTGGAAGGGCTCTCATTGATGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAGGTTGTTCAATGAAAGGCATGTGCCTTGTGGTGGTCATGATGAGTGTGGTTGTCAATGAAACTCAAATGGTAGAGGCAGTGAGATGCGAGGAAAAAGAACT
AAGGCCATGTCTTTTCTCGTTGGTGGAGCCATCGTCAACTTGTTGCAACAAGCTGAGCCACCAAGAGAGTGTATGTGATGTGTCTTGCTTCGTGAGGGATGCGTCCATGG
TGAGCTTGGTTGAAGATGTTGATGCATTGCTTGTTGGGCAAGTTGGGCTATGCATCCATGAGTTGGATACGTTGGTTGAGCGTGCCTATGCGAGGATTGCTGCACATTTG
AGGACACGGAGAAGGCATGTGGGTAGTTGGGATATGAAAATGGTTCCCAATGCTGAAGGACATGGAGAAGGCATATGGGTAGCCGGGGGTCGGCTATGCATTGAGGACAA
ACATAATGTCCAAGGTGAATGCGGCTTCCACAGATTAGATGACACGTTCATGGTGGACCTTGCGTCCAAGAGAGGGCAACACATCCGAAAGGGAAAGTTAGAACGCTGTG
TTCAGAAAGCTCGGAAAGAGGAAATAGAGCATAGGAAGAAGAAGGATTCTTTGGCTAAGTACATGCACCCGAGGCTCAGGGACATGGAGAAGGCCAAAGGGGTAGCCGTT
CTATTAAAATGGGACCCCAATGCTCAGGGACTCGTAGAAGGCATTGTGGGCGGCTCGGAATATAAAGGTACCCAATGCTCAGGGACTCGTAGAAGGCATATGGGTAGCAT
GACAGTTTTCGTTGCCGATCGAAGTCGAGGTTTGTCAAGAGCATTTGGATGGGAAGGCCCCGGTACTGAAGAACTTGGAGAAGGTGACGATCAAGTTTTATGGTTGGTAG
TGGATGCTGTAAGAGGGTCGGTGTTTGTTGTCATCACACTTTTTCCTGGCATTGTGGAGGACGTATTGGTTAAGCTGCACAAGTTTATCTTCCTGGCAGATTTTGTGAAA
CTAAACATGGAGAAAGATGCTGAAATTTCCATAATTCTTGGAAGAACTTTCTTGGCCACTGGAAGGGCTCTCATTGATGTATAA
Protein sequenceShow/hide protein sequence
MKKGCSMKGMCLVVVMMSVVVNETQMVEAVRCEEKELRPCLFSLVEPSSTCCNKLSHQESVCDVSCFVRDASMVSLVEDVDALLVGQVGLCIHELDTLVERAYARIAAHL
RTRRRHVGSWDMKMVPNAEGHGEGIWVAGGRLCIEDKHNVQGECGFHRLDDTFMVDLASKRGQHIRKGKLERCVQKARKEEIEHRKKKDSLAKYMHPRLRDMEKAKGVAV
LLKWDPNAQGLVEGIVGGSEYKGTQCSGTRRRHMGSMTVFVADRSRGLSRAFGWEGPGTEELGEGDDQVLWLVVDAVRGSVFVVITLFPGIVEDVLVKLHKFIFLADFVK
LNMEKDAEISIILGRTFLATGRALIDV