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Clc01G09890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLipid transfer protein
Genome locationClcChr01:11659522..11659815
RNA-Seq ExpressionClc01G09890
SyntenyClc01G09890
Gene Ontology termsGO:0006869 - lipid transport (biological process)
InterPro domainsIPR016140 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR033872 - Non-specific lipid-transfer protein type 2
IPR036312 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP85330.1 probable non-specific lipid-transfer protein akcs9 [Phtheirospermum japonicum]1.2e-1647.13Show/hide
Query:  WFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        W LV V+V++V E Q+  AV C+P EL PC  A   S  PS  CC+K++E  PC+C Y++NP +KPY++   +K + + CGVSIP+C
Subjt:  WFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

KAG8373754.1 hypothetical protein BUALT_Bualt11G0058000 [Buddleja alternifolia]1.8e-1745.98Show/hide
Query:  WFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        WFLV ++VV+V E  +  AV C+P  L PC  A   S +PS  CC K++E QPC+C YMKNP +KPY++   +K + + CG++ P C
Subjt:  WFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

KGN66906.1 hypothetical protein Csa_006987 [Cucumis sativus]4.4e-2763.74Show/hide
Query:  LNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        + G+W L    VVV+NETQ ++AVKCDP ELRPC L+F MSMEPS ACC KV +H+ CYC Y KNPK +PYL+YD ++ IIS CGV+IPTC
Subjt:  LNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

XP_022143278.1 non-specific lipid-transfer protein 2-like [Momordica charantia]4.1e-1741.05Show/hide
Query:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        K   + GLW LVV ++ ++     A+AV C P +L  C  A   S  PS +CC K++E +PC C Y+KNP ++PY++  G+K + S CGV+ P+C
Subjt:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

XP_038904866.1 non-specific lipid-transfer protein 2-like [Benincasa hispida]3.1e-1747.37Show/hide
Query:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        KN S   L  LVV M  ++   + A+AV C   EL PC  AF  +  PS ACC K+KE QPC+C Y+KNPK+  Y++   +K +IS CGVS P C
Subjt:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

TrEMBL top hitse value%identityAlignment
A0A0A0M3W7 AAI domain-containing protein2.1e-2763.74Show/hide
Query:  LNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        + G+W L    VVV+NETQ ++AVKCDP ELRPC L+F MSMEPS ACC KV +H+ CYC Y KNPK +PYL+YD ++ IIS CGV+IPTC
Subjt:  LNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

A0A6J1CQB8 non-specific lipid-transfer protein 2-like2.0e-1741.05Show/hide
Query:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        K   + GLW LVV ++ ++     A+AV C P +L  C  A   S  PS +CC K++E +PC C Y+KNP ++PY++  G+K + S CGV+ P+C
Subjt:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

A0A6J1D4R3 non-specific lipid-transfer protein 2-like9.9e-1742.27Show/hide
Query:  KNFSLNG--LWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        K  S+ G  LW LVV +  ++   +  +AV C P EL PC  A    M PS ACC K++E +PC C Y++NP +KPY++   +K + S CGV+ P+C
Subjt:  KNFSLNG--LWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

A0A6P6A579 non-specific lipid-transfer protein 2-like2.2e-1643.16Show/hide
Query:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        K FS        +V+++   ET+  +AV CDP +L PC  A   S  PS  CC K+KE QPC+C Y+KNP IK +++   SK + S CGV+ P C
Subjt:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

A0A6P6A5B6 non-specific lipid-transfer protein 2-like7.6e-1744.21Show/hide
Query:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        K FS        +V+++   ET+ A+AV CDP +L PC  A   S  PS  CC K+KE QPC+C Y+KNP IK +++   SK + S CGV+ P C
Subjt:  KNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

SwissProt top hitse value%identityAlignment
A2XBN5 Non-specific lipid-transfer protein 28.1e-0830.3Show/hide
Query:  CDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        C+  +L  C  A      P+ ACC  ++  Q C+C + K+P+   Y+    ++  +S CG+++PTC
Subjt:  CDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

P82353 Non-specific lipid-transfer protein 22.3e-1035.29Show/hide
Query:  VKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        V C P +L PC             CC K++E +PC C Y+KNP ++ Y+    ++ + S CGV +P C
Subjt:  VKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

P86809 Non-specific lipid-transfer protein 26.0e-1141.27Show/hide
Query:  CDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSI
        C   +L PC  A   +  PS ACC+K+KE +PC C Y+K+P +K Y+   G++   S CGV++
Subjt:  CDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSI

Q10ST8 Non-specific lipid-transfer protein 28.1e-0830.3Show/hide
Query:  CDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        C+  +L  C  A      P+ ACC  ++  Q C+C + K+P+   Y+    ++  +S CG+++PTC
Subjt:  CDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

Q43681 Probable non-specific lipid-transfer protein AKCS93.6e-1638.14Show/hide
Query:  MKKNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        MK    ++ +  +VVV + +++    A+AV C+P EL  C  A     +PS  CC K+K  +PC C Y+KNP +K Y+   G+K ++S CGV+ P C
Subjt:  MKKNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

Arabidopsis top hitse value%identityAlignment
AT1G48750.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein6.5e-1332.94Show/hide
Query:  LVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        L +   +++     A+ V C P +L  C  A   S  PS ACC K++E QPC C YM+NP ++ Y+    ++ + + C +  P+C
Subjt:  LVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

AT1G73780.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein2.9e-1336.9Show/hide
Query:  VVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        ++++++V  E + A    C+P +L PC        EPS  CC KVKE Q C C Y+KNP  K +L    +K I + C    P C
Subjt:  VVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

AT3G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.3e-1335.23Show/hide
Query:  LWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        L+ L  V+++++     A+AV C P +L PC  A   S  PS  CC K+KE +PC C YM+NP ++ ++    ++ +   C + IP C
Subjt:  LWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

AT5G38160.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein2.1e-1134.41Show/hide
Query:  FSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        F L  +   V V   VV  + +   V CD  +L  C  A      PS  CC K+KEH+ C CTY++NP    Y+    ++  ++ C V+ PTC
Subjt:  FSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC

AT5G38170.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein6.5e-1341.18Show/hide
Query:  VKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC
        V CD  +L  C       + PS  CC K+KE QPC+CTY+K+P+   Y+    +K  ++ CGV  PTC
Subjt:  VKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAAATTTTTCTCTGAATGGCCTGTGGTTTTTGGTGGTTGTGATGGTGGTGGTTGTCAATGAAACTCAACAGGCGCAGGCAGTGAAATGCGACCCAAAAGAGCT
AAGACCATGTCGTTTGGCCTTCAGAATGTCTATGGAGCCATCATTAGCTTGCTGCGACAAGGTGAAGGAGCACCAACCATGCTATTGTACATACATGAAAAATCCAAAGA
TTAAGCCCTATTTAGAATATGATGGCAGCAAAGATATCATTTCTCAATGTGGTGTATCCATCCCAACTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAAATTTTTCTCTGAATGGCCTGTGGTTTTTGGTGGTTGTGATGGTGGTGGTTGTCAATGAAACTCAACAGGCGCAGGCAGTGAAATGCGACCCAAAAGAGCT
AAGACCATGTCGTTTGGCCTTCAGAATGTCTATGGAGCCATCATTAGCTTGCTGCGACAAGGTGAAGGAGCACCAACCATGCTATTGTACATACATGAAAAATCCAAAGA
TTAAGCCCTATTTAGAATATGATGGCAGCAAAGATATCATTTCTCAATGTGGTGTATCCATCCCAACTTGCTAA
Protein sequenceShow/hide protein sequence
MKKNFSLNGLWFLVVVMVVVVNETQQAQAVKCDPKELRPCRLAFRMSMEPSLACCDKVKEHQPCYCTYMKNPKIKPYLEYDGSKDIISQCGVSIPTC