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Clc01G09945 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G09945
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionnuclear pore complex protein NUP1-like
Genome locationClcChr01:12198246..12198636
RNA-Seq ExpressionClc01G09945
SyntenyClc01G09945
Gene Ontology termsGO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0071763 - nuclear membrane organization (biological process)
GO:0005635 - nuclear envelope (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578832.1 Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sororia]7.1e-4096.51Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRP+RRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLP+SRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
KAG7016358.1 Nuclear pore complex protein NUP1 [Cucurbita argyrosperma subsp. argyrosperma]7.1e-4096.51Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRP+RRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLP+SRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
XP_038884353.1 nuclear pore complex protein NUP1-like isoform X1 [Benincasa hispida]2.4e-4098.84Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
XP_038884354.1 nuclear pore complex protein NUP1-like isoform X2 [Benincasa hispida]2.4e-4098.84Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
XP_038884355.1 nuclear pore complex protein NUP1-like isoform X3 [Benincasa hispida]2.4e-4098.84Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
TrEMBL top hitse value%identityAlignment
A0A6J1BX57 nuclear pore complex protein NUP12.4e-3890.8Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSREG
        MATE EE+RYEGGRGGKFQKRP+RRSHTTPYDRPPTALRNSA KGW+S LVDPAQK ITSSAHRLFS+VFRKRLPPPPPSLPLSREG
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSREG
A0A6J1GY88 nuclear pore complex protein NUP1-like3.8e-3993.02Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EE+RYEGGRGGKFQKRP+RRSHTTPYDRPPTALRNSAG GWLSKLVDPAQKLITSSAHRLFSSVFRKR+PPPPPSLP+SRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
A0A6J1JQT4 nuclear pore complex protein NUP1-like isoform X11.4e-3893.02Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRP+RR+HTTPYDRPP ALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLP+ RE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
A0A6J1JSL2 nuclear pore complex protein NUP1-like3.8e-3993.02Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EE+RYEGGRGGKFQKRP+RRSHTTPYDRPPTALRNSAG GWLSKLVDPAQKLITSSAHRLFSSVFRKR+PPPPPSLP+SRE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
A0A6J1K059 nuclear pore complex protein NUP1-like isoform X21.4e-3893.02Show/hide
Query:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
        MATE EEVRYEGGRGGKFQKRP+RR+HTTPYDRPP ALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLP+ RE
Subjt:  MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSRE
SwissProt top hitse value%identityAlignment
Q9CAF4 Nuclear pore complex protein NUP12.8e-1562.32Show/hide
Query:  GRGGKFQKRPIRRSHTTPYDRPPTALRNSA-------GKGWLSKLVDPAQKLITSSAHRLFSSVFRKRL
        G GGKF+K   RRS  TPYDRP T++RN+        G GWLSKLVDPAQ+LIT SA RLF S+ RKRL
Subjt:  GRGGKFQKRPIRRSHTTPYDRPPTALRNSA-------GKGWLSKLVDPAQKLITSSAHRLFSSVFRKRL
Arabidopsis top hitse value%identityAlignment
AT3G10650.1 BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1)2.0e-1662.32Show/hide
Query:  GRGGKFQKRPIRRSHTTPYDRPPTALRNSA-------GKGWLSKLVDPAQKLITSSAHRLFSSVFRKRL
        G GGKF+K   RRS  TPYDRP T++RN+        G GWLSKLVDPAQ+LIT SA RLF S+ RKRL
Subjt:  GRGGKFQKRPIRRSHTTPYDRPPTALRNSA-------GKGWLSKLVDPAQKLITSSAHRLFSSVFRKRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACAGAGTGTGAGGAGGTTCGATACGAAGGAGGAAGAGGTGGGAAGTTTCAGAAAAGGCCTATCAGAAGGTCGCATACGACACCGTATGATCGACCGCCGACTGC
TCTCAGGAACTCTGCTGGAAAAGGATGGCTTTCTAAGCTTGTCGATCCGGCACAGAAGCTAATCACCTCCAGTGCGCACCGGTTGTTTTCTAGTGTGTTTCGTAAACGCC
TTCCCCCTCCGCCGCCGTCATTGCCACTTTCTCGAGAGGGTGCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACAGAGTGTGAGGAGGTTCGATACGAAGGAGGAAGAGGTGGGAAGTTTCAGAAAAGGCCTATCAGAAGGTCGCATACGACACCGTATGATCGACCGCCGACTGC
TCTCAGGAACTCTGCTGGAAAAGGATGGCTTTCTAAGCTTGTCGATCCGGCACAGAAGCTAATCACCTCCAGTGCGCACCGGTTGTTTTCTAGTGTGTTTCGTAAACGCC
TTCCCCCTCCGCCGCCGTCATTGCCACTTTCTCGAGAGGGTGCTGGCTGA
Protein sequenceShow/hide protein sequence
MATECEEVRYEGGRGGKFQKRPIRRSHTTPYDRPPTALRNSAGKGWLSKLVDPAQKLITSSAHRLFSSVFRKRLPPPPPSLPLSREGAG