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Clc01G10000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G10000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCOX assembly mitochondrial protein
Genome locationClcChr01:12483202..12484209
RNA-Seq ExpressionClc01G10000
SyntenyClc01G10000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145445.1 uncharacterized protein LOC101219184 [Cucumis sativus]8.8e-4191.49Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
        MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAEAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
XP_008459043.1 PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo]4.0e-4191.49Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
        MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE EAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
XP_022994930.1 uncharacterized protein LOC111490507 [Cucurbita maxima]4.5e-3786.02Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
        M+PTG+API GDGGCERLEQALR+CHKRLPEGPARRS C HLNR+ AECLVAT CP+EAEAVR+LCSSGGTALKRSQCEQAKFS S CLSSLQ
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
XP_023542217.1 uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]3.5e-3786.02Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
        M+PTG+API GDGGCERLEQALR+CHKRLPEGPARRS C HLNR+ AECLVAT CP+EAEAVR+LCSSGGTALKRSQCEQAKFS S CLSSLQ
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
XP_038893663.1 uncharacterized protein LOC120082530 [Benincasa hispida]3.8e-4495.88Show/hide
Query:  KKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
        KKEMLPTG A ICGDGGCERLEQALRECHKRLPEGPARRSACRHLNR+LAECLVATACPSEAEAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Subjt:  KKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
TrEMBL top hitse value%identityAlignment
A0A0A0LYC1 Uncharacterized protein4.3e-4191.49Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
        MLP GE+P+ GDGGC+RLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSEAEAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
A0A1S3C8S8 uncharacterized protein LOC1034982671.9e-4191.49Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
        MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE EAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
A0A5D3CLT3 Uncharacterized protein1.9e-4191.49Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
        MLP GE+P+CGD GCERLEQALRECHKR+PEGPARRSACRHLNR+LAECLVATACPSE EAVR+LCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
A0A6J1CN74 uncharacterized protein LOC1110126703.7e-3785.26Show/hide
Query:  MLPTGEAPICGD--GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
        MLPTGEAPI G   GGCERLEQALR+CH+R+P+GPARRSACRHLNR+LAECLVATACP+EAEAVR+LCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Subjt:  MLPTGEAPICGD--GGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
A0A6J1K2P5 uncharacterized protein LOC1114905072.2e-3786.02Show/hide
Query:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
        M+PTG+API GDGGCERLEQALR+CHKRLPEGPARRS C HLNR+ AECLVAT CP+EAEAVR+LCSSGGTALKRSQCEQAKFS S CLSSLQ
Subjt:  MLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31175.1 unknown protein1.8e-2873.42Show/hide
Query:  CERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ
        C+RLE+AL +CH+R+PEGPARRS CRHLN+A AEC+VA ACP E+EAVRSLCSSGGT+LKR QCE A+ SLS CLS  Q
Subjt:  CERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQAKFSLSFCLSSLQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTACCAACCGGCGAAGCTCC
GATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGCCGACACCTGAACCGAG
CTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCT
AAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTAAGAACATATACTATGTCTTCTGAAGAAAGCAAACTTGCAGAAACCTTCTCTTCCGTCCCAAATGGTGTGGGACCCCATTGCCAGAAGGCAAAGAAGGAGATGTTAC
CAACCGGCGAAGCTCCGATATGTGGTGACGGCGGCTGCGAGCGGCTGGAGCAGGCTCTCCGAGAGTGCCACAAGCGACTTCCAGAAGGCCCGGCCCGGCGGTCGGCTTGC
CGACACCTGAACCGAGCTCTTGCAGAGTGTCTGGTGGCGACGGCTTGCCCTAGCGAGGCGGAGGCGGTGCGATCCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATC
GCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGTCTCTCATCTCTCCAATTTTGAAACCCTAGATCCTTGAAATCGGCGTAGAAGAAGGGGAAATCGGTTGGTTGGG
AATTGAATCAGGGAAATTGAATTAATGAGTTTGCCAAGATGATGAAGTACTCTCGGTTTTAAAAATTCCGATCTCCTTCAACAGTCCCACCCCTGATGGCTTGTTTGTTT
GATTGAGAATCGATCAATACCTTTTGAATTATATCATTGTTGAGAATAATCTTAAAGTTGGAGCTGCTATTGCTATTGCAAATGCTAATTCCAAGATAACTCTATCAATG
GATGATTGGGAGCAGGCAAATACTCTTTGTAGATATTTGAACTTTTTTTCTTAAATTTCCAGAAATATTTTCATTGTAAACAAAGATCTGCTGATTCATGTATATTTGAT
TCTTTATGCAATTTTGGGACCTGGGACAGTATTGTTCAAGCCACTGGGAAAACTCCCATTTGTAGTTGTCCCTATCAATGATGAATCATTTACAAAACTATTATTATTCA
ACTGAGTTTTTAACCCAATGGGAAAAAACGAAAACAATAGTTGTGATTATTTACCTAAAATTTTATATGGTGAGAGTTGTTCTACGCGATTAGTTAAAATGTGTGTAAAC
TGGTTTCAAGAAACTCAC
Protein sequenceShow/hide protein sequence
MSSEESKLAETFSSVPNGVGPHCQKAKKEMLPTGEAPICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRALAECLVATACPSEAEAVRSLCSSGGTALKRSQCEQA
KFSLSFCLSSLQF