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Clc01G10280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G10280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionANK_REP_REGION domain-containing protein
Genome locationClcChr01:13150390..13154500
RNA-Seq ExpressionClc01G10280
SyntenyClc01G10280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002110 - Ankyrin repeat
IPR026961 - PGG domain
IPR036770 - Ankyrin repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653649.1 hypothetical protein Csa_006883 [Cucumis sativus]4.2e-2274.19Show/hide
Query:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        K+ ESCSA  VLV+TV FAAAYTV GG+NSK GS   L+   IY+VFTVMDI+ALAT L SVVLF SILTSSFK++DF HTLPMKLSIGFQLL
Subjt:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

KAE8653650.1 hypothetical protein Csa_007179 [Cucumis sativus]1.9e-2274.36Show/hide
Query:  EEDIIIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDD
        EEDI    E++E DFWKNN GN PLHEAATVGNLGA+K LV E+K++DMLVKNIYGETPLYRAA +G LHIV+YFLD+
Subjt:  EEDIIIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDD

XP_011648562.2 uncharacterized protein LOC101204378 [Cucumis sativus]1.9e-2274.36Show/hide
Query:  EEDIIIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDD
        EEDI    E++E DFWKNN GN PLHEAATVGNLGA+K LV E+K++DMLVKNIYGETPLYRAA +G LHIV+YFLD+
Subjt:  EEDIIIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDD

XP_031736173.1 uncharacterized protein LOC105434529 isoform X3 [Cucumis sativus]2.7e-2173.08Show/hide
Query:  EEDIIIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDD
        EED  I  EE EE FWKNN GN PLHEAAT+GNL A+K LV E+K++DMLVKNIYGETPLYRAAK+GQ HIV+Y LD+
Subjt:  EEDIIIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDD

XP_031739511.1 uncharacterized protein LOC101203890 [Cucumis sativus]4.2e-2274.19Show/hide
Query:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        K+ ESCSA  VLV+TV FAAAYTV GG+NSK GS   L+   IY+VFTVMDI+ALAT L SVVLF SILTSSFK++DF HTLPMKLSIGFQLL
Subjt:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

TrEMBL top hitse value%identityAlignment
A0A0A0M0P3 ANK_REP_REGION domain-containing protein3.0e-2153.77Show/hide
Query:  QWFIGRASVKRKENASGSIQRGGRAEEDI---IIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIV
        QW         +E     +Q    ++ D    +    E EE FWKNN GN PLHEAAT+GNL A+K LV E+K++DMLVKNIYGETPLYRAAK+GQ HIV
Subjt:  QWFIGRASVKRKENASGSIQRGGRAEEDI---IIGGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIV

Query:  KYFLDD
        +Y LD+
Subjt:  KYFLDD

A0A1S3C9K3 protein ACCELERATED CELL DEATH 6-like3.0e-2172.04Show/hide
Query:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        K+ ESCS   VLV+TV FAAAYTV GG+N+K GS   L+   IYIVFTVMDI+ALAT L SVVLF SILTSSFK+++F HTLPMKLSIGFQLL
Subjt:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

A0A5A7TMX3 Protein ACCELERATED CELL DEATH 6-like3.0e-2172.04Show/hide
Query:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        K+ ESCS   VLV+TV FAAAYTV GG+N+K GS   L+   IYIVFTVMDI+ALAT L SVVLF SILTSSFK+++F HTLPMKLSIGFQLL
Subjt:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

A0A6J1IIE1 uncharacterized protein LOC1114734432.3e-2169.47Show/hide
Query:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLLCL
        K+ ESCSA  VL+STV FAAAYTV GG+NSK GS   L+   IYIVFT+MDI+ LAT L S+VLF S+LTSSFKI DF HTLP+KLS+GFQLL L
Subjt:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLLCL

A0A6J1IIM4 uncharacterized protein LOC1114743205.0e-2168.42Show/hide
Query:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLLCL
        K+ ESCSA  VL+STV FAAAYTV GG+NSK GS   L+   IYIVFT+MDI+ LAT L S+VLF S+LTSSFK+ DF HTLP+KLS+GFQLL L
Subjt:  KSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLLCL

SwissProt top hitse value%identityAlignment
P40480 Protein HOS41.9e-0434.29Show/hide
Query:  GGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFL
        GG ++ +   ++N GN  LHEAA  G++  ++ L+E   + ++    ++G+TPL  A+  G L +VKY L
Subjt:  GGEEMEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFL

Arabidopsis top hitse value%identityAlignment
AT3G18670.1 Ankyrin repeat family protein1.9e-0432.97Show/hide
Query:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLLCL
        SC+    L++T+ F++A+TV GG  S  G   ++  +  + +F + D ++L T   S+++F  IL S ++ +DF  +LP KL +G   L L
Subjt:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLLCL

AT3G54070.1 Ankyrin repeat family protein1.7e-0536.84Show/hide
Query:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLI------LNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        +C     L++TV FAAA T+ GG N   G     +        L++ +FT+ D VAL + + S+V+F SI TS +  +DF + LP KL  G   L
Subjt:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLI------LNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

AT5G04690.1 Ankyrin repeat family protein7.7e-0634.83Show/hide
Query:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        SCS    L+ TV FAA +TV GG +   G   F     I+++F V D+++      SV++F  ILT+ +   DF  +LP  +  G   L
Subjt:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

AT5G04700.1 Ankyrin repeat family protein1.7e-0534.83Show/hide
Query:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        SCS    L+ TV FAA +TV GG +       F + +  +I+F V D+++      SV++F  ILT+ +   DF   LP K+  G  +L
Subjt:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL

AT5G04730.1 Ankyrin-repeat containing protein2.2e-0540Show/hide
Query:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILN-LIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL
        +CS    L++TV F A +TV GG++   GS   LILN L +  F   D +A      SV++F SILTS +   DF  +LP K+ +G  +L
Subjt:  SCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILN-LIYIVFTVMDIVALATVLKSVVLFSSILTSSFKIKDFPHTLPMKLSIGFQLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAATTGCCAGGAACAGATTTCAGACAGGAGACGAAGTGTTAGGCCATTGATATCTAGAAGTAGACTGGGATCACATAAGAAAGATGACAAAAATATTGTTGTCGA
CATTTCCTCTAATGATAAATCCTTGGAGTCTTGTTCTGCTGCTGTGGTCCTCGTTTCGACTGTCTTCTTTGCCGCTGCCTACACTGTCATTGGTGGGGTCAATAGCAAGA
TGGGCTCTTCATTTTTCCTCATATTGAACCTAATCTACATTGTGTTCACGGTCATGGACATTGTTGCCCTTGCCACCGTGCTCAAGTCGGTGGTTTTGTTTTCATCGATT
CTAACGTCATCGTTTAAGATCAAGGATTTTCCACATACGTTGCCGATGAAGCTCTCGATTGGATTCCAGTTGTTGTGTCTTCTCGGTGGCAAGTACGATGATGGCGTTTG
CTTTGACGATTGTGTTGATGGTGAAGTCGGAGGAGATGAAATGAACGGTAAGTTTGTTGTATATGGCGACGTTTCTTTTGGTGACCATCAATGGTTCATCGGTCGTGCGA
GTGTTAAAAGAAAAGAGAATGCATCTGGCAGTATACAGCGGGGAGGAAGAGCCGAGGAGGACATTATTATTGGTGGCGAAGAAATGGAAGAAGATTTTTGGAAGAACAAC
TGCGGAAACAGGCCGCTGCACGAGGCGGCGACGGTGGGGAATTTGGGGGCCCTTAAGTTTCTGGTTGAAGAATTCAAGGAAAGGGATATGTTGGTGAAGAACATTTATGG
GGAAACTCCATTGTATAGAGCTGCTAAATATGGACAGCTTCACATTGTTAAGTATTTTTTGGATGATCGATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAATTGCCAGGAACAGATTTCAGACAGGAGACGAAGTGTTAGGCCATTGATATCTAGAAGTAGACTGGGATCACATAAGAAAGATGACAAAAATATTGTTGTCGA
CATTTCCTCTAATGATAAATCCTTGGAGTCTTGTTCTGCTGCTGTGGTCCTCGTTTCGACTGTCTTCTTTGCCGCTGCCTACACTGTCATTGGTGGGGTCAATAGCAAGA
TGGGCTCTTCATTTTTCCTCATATTGAACCTAATCTACATTGTGTTCACGGTCATGGACATTGTTGCCCTTGCCACCGTGCTCAAGTCGGTGGTTTTGTTTTCATCGATT
CTAACGTCATCGTTTAAGATCAAGGATTTTCCACATACGTTGCCGATGAAGCTCTCGATTGGATTCCAGTTGTTGTGTCTTCTCGGTGGCAAGTACGATGATGGCGTTTG
CTTTGACGATTGTGTTGATGGTGAAGTCGGAGGAGATGAAATGAACGGTAAGTTTGTTGTATATGGCGACGTTTCTTTTGGTGACCATCAATGGTTCATCGGTCGTGCGA
GTGTTAAAAGAAAAGAGAATGCATCTGGCAGTATACAGCGGGGAGGAAGAGCCGAGGAGGACATTATTATTGGTGGCGAAGAAATGGAAGAAGATTTTTGGAAGAACAAC
TGCGGAAACAGGCCGCTGCACGAGGCGGCGACGGTGGGGAATTTGGGGGCCCTTAAGTTTCTGGTTGAAGAATTCAAGGAAAGGGATATGTTGGTGAAGAACATTTATGG
GGAAACTCCATTGTATAGAGCTGCTAAATATGGACAGCTTCACATTGTTAAGTATTTTTTGGATGATCGATTGTGA
Protein sequenceShow/hide protein sequence
MSNCQEQISDRRRSVRPLISRSRLGSHKKDDKNIVVDISSNDKSLESCSAAVVLVSTVFFAAAYTVIGGVNSKMGSSFFLILNLIYIVFTVMDIVALATVLKSVVLFSSI
LTSSFKIKDFPHTLPMKLSIGFQLLCLLGGKYDDGVCFDDCVDGEVGGDEMNGKFVVYGDVSFGDHQWFIGRASVKRKENASGSIQRGGRAEEDIIIGGEEMEEDFWKNN
CGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDDRL