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Clc01G10297 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G10297
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr01:13206010..13206490
RNA-Seq ExpressionClc01G10297
SyntenyClc01G10297
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052286.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-1949.54Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG-----------NRPTSNIPTFDCMDDSLPDTPTSRQPGSS
        M   ACSGFGWN+E KC+ AEKE+FD WVRSHP +KG+ +KPFL+YDEL+ VFG+DRATG           N P      FD  D++    P +   GS 
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG-----------NRPTSNIPTFDCMDDSLPDTPTSRQPGSS

Query:  NASRGSKRN
           RGS+R+
Subjt:  NASRGSKRN

XP_038877524.1 uncharacterized protein LOC120069782 [Benincasa hispida]3.5e-2451.56Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG-------------------------------NRPTSNIPT
        MLSNACSGF WN+EFKC++ EKEVFD    SHPN+KG++HKPFL+YDELSIVFGKDRAT                                + P  NI T
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG-------------------------------NRPTSNIPT

Query:  FDCMDDSLPDTPTSRQPGSSNASRGSKR
         D M++  PDTP SR  GSSN  RG+KR
Subjt:  FDCMDDSLPDTPTSRQPGSSNASRGSKR

XP_038887032.1 uncharacterized protein LOC120077200 [Benincasa hispida]7.3e-2265.82Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTSNIPTFDCMDDSLPD
        MLSNA SGFGWN+EFK V+ EKEVFD WVR HPN+KG+RHKPF HYDELSIVFGKDRA G    +        D+ L D
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTSNIPTFDCMDDSLPD

XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]2.5e-2265.82Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTSNIPTFDCMDDSLPD
        MLSNAC+GFGWN+EFKCV  EKEVFD WV SHPN KG+RHKPF H DELSIVFGKDRAT     +        D+ L D
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTSNIPTFDCMDDSLPD

XP_038896734.1 uncharacterized protein At2g29880-like [Benincasa hispida]7.3e-2276.67Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG
        MLSNAC+ FGWN+EFKCV+ EKEVFD WV+SHPN+KG+RHKP  HY+ELSI+FGKD ATG
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG

TrEMBL top hitse value%identityAlignment
A0A1S3CTN6 uncharacterized protein LOC1035043324.8e-1959.04Show/hide
Query:  CSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS-------NIPTFDCM-DDSLPDT
        CSGFGWN+E KC+ AEKEVFD WV+SHP +KG+ +K F+HYDELS VFGKDRATG R  S       + P +D    D++PDT
Subjt:  CSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS-------NIPTFDCM-DDSLPDT

A0A5A7UDL5 Retrotransposon protein2.1e-1949.54Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG-----------NRPTSNIPTFDCMDDSLPDTPTSRQPGSS
        M   ACSGFGWN+E KC+ AEKE+FD WVRSHP +KG+ +KPFL+YDEL+ VFG+DRATG           N P      FD  D++    P +   GS 
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATG-----------NRPTSNIPTFDCMDDSLPDTPTSRQPGSS

Query:  NASRGSKRN
           RGS+R+
Subjt:  NASRGSKRN

A0A5A7VBC5 Retrotransposon protein5.3e-1846.4Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS--NIPTFDCMD------DSLPDTP-----------
        M    CSGFGWN+E KC+ AEKEVFD WV+SHP +KG+ +K F HYDELS VFGKDRATG+R  S  N+ + D  +      D++PDT            
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS--NIPTFDCMD------DSLPDTP-----------

Query:  ---------TSRQPGSSNASRGSKR
                 T+R     N S GSKR
Subjt:  ---------TSRQPGSSNASRGSKR

A0A5D3C1M0 Retrotransposon protein5.3e-1854.35Show/hide
Query:  CSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS-------NIPTFDC-MDDSLPDT--PTSRQPG
        CSGFGWN+E KC+  EKE+FD WV+SHP +KG+ +K F+HYDELS VFGKDRATG R  S       + P +D    D++PDT  P    PG
Subjt:  CSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTS-------NIPTFDC-MDDSLPDT--PTSRQPG

A0A5D3DG22 Retrotransposon protein6.9e-1849Show/hide
Query:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPT------SNIPTFDCMDDSLP-------DTPTSRQPG
        M   +CSGFGWNEEF+C+ AE+++FD+WV+SHP +KG+ HK F +YD+LS VFGKDRATG R        SN+P  +  +D++P       D PT    G
Subjt:  MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPT------SNIPTFDCMDDSLP-------DTPTSRQPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein1.9e-0738.33Show/hide
Query:  LSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGN
        L    SGFGW+ E K   A  EV+  ++++HPN K ++ +   H+++L I+FG   ATG+
Subjt:  LSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAGTAACGCATGTAGCGGATTCGGTTGGAACGAAGAATTCAAGTGTGTGGATGCAGAGAAGGAGGTGTTTGACGCATGGGTTCGATCCCATCCTAACTCAAAGGG
TATAAGGCACAAACCCTTTCTGCACTATGATGAACTTTCCATTGTATTTGGTAAGGATAGAGCTACTGGAAATCGACCGACTAGTAACATACCGACGTTTGATTGCATGG
ATGACAGTTTACCAGATACACCTACCAGTAGGCAACCTGGATCGAGCAACGCTTCAAGAGGAAGCAAGCGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAGTAACGCATGTAGCGGATTCGGTTGGAACGAAGAATTCAAGTGTGTGGATGCAGAGAAGGAGGTGTTTGACGCATGGGTTCGATCCCATCCTAACTCAAAGGG
TATAAGGCACAAACCCTTTCTGCACTATGATGAACTTTCCATTGTATTTGGTAAGGATAGAGCTACTGGAAATCGACCGACTAGTAACATACCGACGTTTGATTGCATGG
ATGACAGTTTACCAGATACACCTACCAGTAGGCAACCTGGATCGAGCAACGCTTCAAGAGGAAGCAAGCGAAATTAA
Protein sequenceShow/hide protein sequence
MLSNACSGFGWNEEFKCVDAEKEVFDAWVRSHPNSKGIRHKPFLHYDELSIVFGKDRATGNRPTSNIPTFDCMDDSLPDTPTSRQPGSSNASRGSKRN