; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G10590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G10590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationClcChr01:14610712..14611934
RNA-Seq ExpressionClc01G10590
SyntenyClc01G10590
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033137.1 polyprotein [Cucumis melo var. makuwa]2.0e-0422.77Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEG------------KAISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHE------------LSKG
        WLF  + YF IH L D EKL V V+SF+G            +A +GW  +K ++  RF++ +EG L      +K E  + +                +  
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEG------------KAISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHE------------LSKG

Query:  LQVQLIEDREPVFQLAQESEDPSYATNLTK------GGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDI-EESVLGFSSLSMIKLRGKVGDH
        L+   +    P  +   E+ +P+    + K          G  L  + +     FF  +I  +  ++  V  + +++   SV+G S+   +K++GK+G+ 
Subjt:  LQVQLIEDREPVFQLAQESEDPSYATNLTK------GGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDI-EESVLGFSSLSMIKLRGKVGDH

Query:  KVLLNLNLMLLETTNSRVIMEKWG
        +V++ ++  +     +  I+ K G
Subjt:  KVLLNLNLMLLETTNSRVIMEKWG

KAA0037388.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]5.9e-0437.84Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK
        WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ ++EG+L   +F +K
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK

KAA0066078.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]1.5e-0432.35Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPV
        WLF  + YF IHKL D EK+ V VISF+G A+            + W  +K+++ ERF+ ++EG+L    F  K    + +   L   L   L +  + V
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPV

Query:  FQ
         +
Subjt:  FQ

TYJ97524.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]5.9e-0437.84Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK
        WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ ++EG+L   +F +K
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]1.0e-0334.57Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIAD
        WLF  + YF IHKL D EK+ V  ISFEG A+            +GW  +K ++  RF+  +EG++C     +K +  + +
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIAD

TrEMBL top hitse value%identityAlignment
A0A5A7SUY2 Polyprotein9.7e-0522.77Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEG------------KAISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHE------------LSKG
        WLF  + YF IH L D EKL V V+SF+G            +A +GW  +K ++  RF++ +EG L      +K E  + +                +  
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEG------------KAISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHE------------LSKG

Query:  LQVQLIEDREPVFQLAQESEDPSYATNLTK------GGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDI-EESVLGFSSLSMIKLRGKVGDH
        L+   +    P  +   E+ +P+    + K          G  L  + +     FF  +I  +  ++  V  + +++   SV+G S+   +K++GK+G+ 
Subjt:  LQVQLIEDREPVFQLAQESEDPSYATNLTK------GGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDI-EESVLGFSSLSMIKLRGKVGDH

Query:  KVLLNLNLMLLETTNSRVIMEKWG
        +V++ ++  +     +  I+ K G
Subjt:  KVLLNLNLMLLETTNSRVIMEKWG

A0A5A7SZC7 Transposon Tf2-1 polyprotein isoform X14.8e-0432.94Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKA------------ISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHEL
        WLF  + YF IH L D EK+ V V+SF+G A               W  +K ++  RFQ ++EG++C     +K E  + +   L
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKA------------ISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHEL

A0A5A7T3M0 Transposon Tf2-1 polyprotein isoform X12.8e-0437.84Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK
        WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ ++EG+L   +F +K
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK

A0A5D3BEN4 Transposon Tf2-1 polyprotein isoform X12.8e-0437.84Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK
        WLF  + YF IHKL D EK+ V VISF+G  +            + W  +K+++ ERF+ ++EG+L   +F +K
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMK

A0A5D3BLG2 Transposon Tf2-1 polyprotein isoform X17.5e-0532.35Show/hide
Query:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPV
        WLF  + YF IHKL D EK+ V VISF+G A+            + W  +K+++ ERF+ ++EG+L    F  K    + +   L   L   L +  + V
Subjt:  WLFCTEWYFDIHKLFDVEKLRVVVISFEGKAI------------SGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPV

Query:  FQ
         +
Subjt:  FQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAGGAAGCAACTACCATGACTGCAATGATGTGGTTGTTCTGCACTGAATGGTACTTTGACATTCATAAGTTATTTGATGTGGAAAAGTTAAGGGTGGTTGTCAT
AAGCTTTGAGGGAAAAGCGATAAGTGGGTGGATGAAGGTAAAGGCTCAAATTTTTGAGAGATTTCAACTGTTGCAGGAGGGGAATTTGTGTGCATGGTTATTTGTCATGA
AGTTGGAGGGAAGGATTGCAGATTGTCATGAACTTTCTAAAGGGCTGCAAGTCCAACTCATAGAGGATAGGGAGCCAGTGTTCCAATTGGCCCAAGAATCAGAAGATCCA
AGTTACGCCACAAACTTAACAAAAGGAGGTGGGAGCGGAAATGGGTTGAATAAAATGACCCAGTCAACAGGAAGGGGCTTTTTTGCGTTGCAAATTGCAACAAGAAGTAT
TCAATTGGCCATTGTTGGAGAAGTCGAGATGGATATAGAGGAATCGGTGTTGGGATTTTCAAGTCTGAGCATGATCAAGCTCAGAGGAAAAGTGGGAGACCACAAGGTTT
TATTGAACTTGAACCTTATGCTATTAGAAACAACAAATTCTAGGGTCATCATGGAGAAATGGGGCAACAACAACGGGGCATGGAGTATGATCACAAAGATGATGGTAGAG
GATCTCCTCCTGCTTGATTTAGGAGGGCTCAAAGTAAAAATGGGAGACCACGATGTTCAGGGCAACCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGAGGAAGCAACTACCATGACTGCAATGATGTGGTTGTTCTGCACTGAATGGTACTTTGACATTCATAAGTTATTTGATGTGGAAAAGTTAAGGGTGGTTGTCAT
AAGCTTTGAGGGAAAAGCGATAAGTGGGTGGATGAAGGTAAAGGCTCAAATTTTTGAGAGATTTCAACTGTTGCAGGAGGGGAATTTGTGTGCATGGTTATTTGTCATGA
AGTTGGAGGGAAGGATTGCAGATTGTCATGAACTTTCTAAAGGGCTGCAAGTCCAACTCATAGAGGATAGGGAGCCAGTGTTCCAATTGGCCCAAGAATCAGAAGATCCA
AGTTACGCCACAAACTTAACAAAAGGAGGTGGGAGCGGAAATGGGTTGAATAAAATGACCCAGTCAACAGGAAGGGGCTTTTTTGCGTTGCAAATTGCAACAAGAAGTAT
TCAATTGGCCATTGTTGGAGAAGTCGAGATGGATATAGAGGAATCGGTGTTGGGATTTTCAAGTCTGAGCATGATCAAGCTCAGAGGAAAAGTGGGAGACCACAAGGTTT
TATTGAACTTGAACCTTATGCTATTAGAAACAACAAATTCTAGGGTCATCATGGAGAAATGGGGCAACAACAACGGGGCATGGAGTATGATCACAAAGATGATGGTAGAG
GATCTCCTCCTGCTTGATTTAGGAGGGCTCAAAGTAAAAATGGGAGACCACGATGTTCAGGGCAACCCATAA
Protein sequenceShow/hide protein sequence
MSEEATTMTAMMWLFCTEWYFDIHKLFDVEKLRVVVISFEGKAISGWMKVKAQIFERFQLLQEGNLCAWLFVMKLEGRIADCHELSKGLQVQLIEDREPVFQLAQESEDP
SYATNLTKGGGSGNGLNKMTQSTGRGFFALQIATRSIQLAIVGEVEMDIEESVLGFSSLSMIKLRGKVGDHKVLLNLNLMLLETTNSRVIMEKWGNNNGAWSMITKMMVE
DLLLLDLGGLKVKMGDHDVQGNP