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Clc01G11215 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G11215
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNase H domain-containing protein
Genome locationClcChr01:16715815..16716153
RNA-Seq ExpressionClc01G11215
SyntenyClc01G11215
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2597616.1 hypothetical protein D8674_000536 [Pyrus ussuriensis x Pyrus communis]2.8e-0936.78Show/hide
Query:  APNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL
        A  WT  PL F K+NVD AW   +    +  ++R+  GN +  + K+ +    P L EAFA++EGL  A   G  N+I++SD  +I+
Subjt:  APNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL

KAE8811717.1 hypothetical protein D1007_11513 [Hordeum vulgare]4.3e-1039.08Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        W+  P  + KLNVDA +  ++ +  I AI+R+ KG  L  A   ID+ + P  AEA A++ GL+ A ++GC  ++V SD LEI+  +
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]5.1e-1141.38Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        W P P  F KLNVD A  +++ ++GI  +LR+  G ++  A K  D    P   E  A+  GL F  SLG PNL+VESDCL ++ ++
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

XP_024046567.1 uncharacterized protein LOC112100924 [Citrus clementina]2.1e-0939.76Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEI
        WTP P N  K+NVDAA K +    G+  ++RN +G +L  A KS++      +AEA+AIK G+  A  L   ++I+E+DC  +
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEI

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.9e-1346.07Show/hide
Query:  KKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDC
        KK  T    W+  P +F KLNVDAAWK     +G SAI+R+++G+L  V   SID  +PPPLAEAF + +GL   + +    +IV+SDC
Subjt:  KKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDC

TrEMBL top hitse value%identityAlignment
A0A2I4FLN6 uncharacterized protein LOC1090001952.5e-1141.38Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI
        W P P  F KLNVD A  +++ ++GI  +LR+  G ++  A K  D    P   E  A+  GL F  SLG PNL+VESDCL ++ ++
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQI

A0A453QKC2 RNase H domain-containing protein2.3e-0935.42Show/hide
Query:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMRQG
        WT     F KLNVDA++++   Q  +  +LR+ KG  +  +++ ++       AEA+A++ GL  A  LG   L+VESDCLE++N +   G    G
Subjt:  WTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMRQG

A0A5N5F3P3 RNase H domain-containing protein1.3e-0936.78Show/hide
Query:  APNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL
        A  WT  PL F K+NVD AW   +    +  ++R+  GN +  + K+ +    P L EAFA++EGL  A   G  N+I++SD  +I+
Subjt:  APNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEIL

A0A7N2LIC5 RNase H domain-containing protein1.8e-0935.64Show/hide
Query:  KKDLTFAP-NWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGV
        K+D+ + P  WTP P    K N DAA    +   G+  +LR+S GN++   ++ I L     LAEA A +  + FAA L    ++VE DCL ++  ++G 
Subjt:  KKDLTFAP-NWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGV

Query:  G
        G
Subjt:  G

A0A7N2N656 RNase H domain-containing protein1.8e-0935.64Show/hide
Query:  KKDLTFAP-NWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGV
        K+D+ + P  WTP P    K N DAA    +   G+  +LR+S GN++   ++ I L     LAEA A +  + FAA L    ++VE DCL ++  ++G 
Subjt:  KKDLTFAP-NWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGV

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein9.9e-0528.57Show/hide
Query:  PKKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESD---CLEILN
        P+ + +    W P P  + K N DA W  +  + GI  +LRN KG +  + A+++        AE  A++  +   +      +I ESD    +EILN
Subjt:  PKKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESD---CLEILN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGAAGGATTTAACATTTGCTCCTAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACGGGTAT
TAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGCAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATAAAGGAAGGTC
TGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGGCAAGGGCTGCAGCTG
CTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGAAGGATTTAACATTTGCTCCTAATTGGACCCCTACCCCTCTTAATTTTTGCAAATTGAATGTTGATGCTGCATGGAAATCAGAGATTCCTCAGACGGGTAT
TAGTGCAATTTTAAGAAACTCAAAAGGTAACCTATTGGGAGTTGCAGCAAAATCAATCGATCTGGATTTCCCTCCCCCTCTGGCTGAAGCTTTCGCTATAAAGGAAGGTC
TGCATTTTGCTGCTAGCTTGGGATGCCCTAATCTGATTGTCGAATCTGACTGCTTGGAAATTCTAAATCAAATTGATGGAGTTGGAGTTATGAGGCAAGGGCTGCAGCTG
CTGGATTGA
Protein sequenceShow/hide protein sequence
MPKKDLTFAPNWTPTPLNFCKLNVDAAWKSEIPQTGISAILRNSKGNLLGVAAKSIDLDFPPPLAEAFAIKEGLHFAASLGCPNLIVESDCLEILNQIDGVGVMRQGLQL
LD