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Clc01G11310 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G11310
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Genome locationClcChr01:16910951..16911151
RNA-Seq ExpressionClc01G11310
SyntenyClc01G11310
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588590.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]4.5e-1578.57Show/hide
Query:  MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG
        +KLFDEMV+SGI PDRIVFMAV SACSHA LV+K L YFRSMV DYN NPD E+YG
Subjt:  MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG

RVW39116.1 putative pentatricopeptide repeat-containing protein [Vitis vinifera]4.5e-1571.93Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG
        A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG

XP_008450527.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]2.6e-1576.79Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        A+KLFDEMVQSGI PDRIVFM V S CSHA LVD+ L+YFRSM+ DYN NPDQE+Y
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

XP_011659402.1 putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus]4.5e-1576.79Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        A+KLFDEMVQSGI PDRIVFM V   CSHA LVDK L+YFRSM+ DYN NPDQE+Y
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

XP_023891648.1 putative pentatricopeptide repeat-containing protein At1g56570 [Quercus suber]4.5e-1571.93Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG
        A++LFD+M++SGI PD+IV+MAV SACSHA LVD+ LRYF+SMVGDYN  PDQE+YG
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG

TrEMBL top hitse value%identityAlignment
A0A1S3BQ30 putative pentatricopeptide repeat-containing protein At1g565701.3e-1576.79Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        A+KLFDEMVQSGI PDRIVFM V S CSHA LVD+ L+YFRSM+ DYN NPDQE+Y
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

A0A438DUD8 Putative pentatricopeptide repeat-containing protein2.2e-1571.93Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG
        A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG

A0A438IM61 Putative pentatricopeptide repeat-containing protein2.2e-1571.93Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG
        A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG

A0A5D3CEL5 Putative pentatricopeptide repeat-containing protein1.3e-1576.79Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        A+KLFDEMVQSGI PDRIVFM V S CSHA LVD+ L+YFRSM+ DYN NPDQE+Y
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

F6I4U5 Uncharacterized protein2.2e-1571.93Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG
        A++LFD+MV+SGI PDR+VFMA+ SACSHA LVD+ LRYF+ MVGDYN +PDQE+YG
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYG

SwissProt top hitse value%identityAlignment
Q56X05 Pentatricopeptide repeat-containing protein At1g061431.2e-0741.27Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF
        A+K+F +M    + P+ + F++V +AC+HA LVD+  R +RSM+ DY+   + E YGG   LF
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial4.2e-0847.37Show/hide
Query:  MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        + + LFD+M++ GI PD  VF+ V SACSH+ L DK L  FR+M  +Y   P  E Y
Subjt:  MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

Q9FXA9 Putative pentatricopeptide repeat-containing protein At1g565701.5e-1362.5Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        A++LFD+MV SGI PDRIVFMAV SAC HA LV+K L+YF  M  +Y  NPD+++Y
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331701.2e-0745.45Show/hide
Query:  MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        ++LF +M   GI PD++ F+ V SACSH+ LV +  ++ RSM GDY   P+ E Y
Subjt:  MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

Q9STE1 Pentatricopeptide repeat-containing protein At4g213004.2e-0849.18Show/hide
Query:  LFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF
        LF EMV+ SGI PD+I F+ + S+C H   VD+ +R+FRSM  DY   P QE Y     LF
Subjt:  LFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF

Arabidopsis top hitse value%identityAlignment
AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.7e-0941.27Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF
        A+K+F +M    + P+ + F++V +AC+HA LVD+  R +RSM+ DY+   + E YGG   LF
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF

AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-1462.5Show/hide
Query:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        A++LFD+MV SGI PDRIVFMAV SAC HA LV+K L+YF  M  +Y  NPD+++Y
Subjt:  AMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-0947.37Show/hide
Query:  MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        + + LFD+M++ GI PD  VF+ V SACSH+ L DK L  FR+M  +Y   P  E Y
Subjt:  MAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY

AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-0949.18Show/hide
Query:  LFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF
        LF EMV+ SGI PD+I F+ + S+C H   VD+ +R+FRSM  DY   P QE Y     LF
Subjt:  LFDEMVQ-SGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLF

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.7e-0945.45Show/hide
Query:  MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY
        ++LF +M   GI PD++ F+ V SACSH+ LV +  ++ RSM GDY   P+ E Y
Subjt:  MKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCCAAGTGCTTGCAGCCATGCTGATCTTGTTGACAA
GGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATGTATGGGGGCTGTGGTGGACTTTTTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCCATGAAGTTGTTCGATGAAATGGTTCAAAGTGGAATTCTACCTGATCGGATAGTGTTCATGGCAGTCCCAAGTGCTTGCAGCCATGCTGATCTTGTTGACAA
GGAACTAAGATATTTTAGATCAATGGTGGGGGATTACAATCCAAACCCAGATCAAGAAATGTATGGGGGCTGTGGTGGACTTTTTTGGTGA
Protein sequenceShow/hide protein sequence
MMAMKLFDEMVQSGILPDRIVFMAVPSACSHADLVDKELRYFRSMVGDYNPNPDQEMYGGCGGLFW