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Clc01G11390 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G11390
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationClcChr01:17433974..17437601
RNA-Seq ExpressionClc01G11390
SyntenyClc01G11390
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJS52311.1 RNA polymerase beta'' subunit [Indofevillea khasiana]3.7e-1378.57Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I VQSI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

YP_004841773.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo]1.4e-1276.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]1.4e-1276.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

YP_009560825.1 RpoC2 [Trichosanthes kirilowii]1.4e-1276.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

YP_009751812.1 RNA polymerase beta'' subunit [Indofevillea khasiana]3.7e-1378.57Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I VQSI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

TrEMBL top hitse value%identityAlignment
A0A1X9Q1J9 DNA-directed RNA polymerase subunit beta''6.7e-1376.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

A0A218KG46 DNA-directed RNA polymerase subunit beta''6.7e-1376.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

A0A6H0ERQ3 DNA-directed RNA polymerase subunit beta''1.8e-1378.57Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I VQSI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

A0A6M3RTH8 DNA-directed RNA polymerase subunit beta''6.7e-1376.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

A0A6M4SPN7 DNA-directed RNA polymerase subunit beta''1.8e-1378.57Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I VQSI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

SwissProt top hitse value%identityAlignment
B1NWE0 DNA-directed RNA polymerase subunit beta''9.4e-1267.86Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVK+FKPK   Q KVDRF  IPEE  ILPESSS+M+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

Q14FG7 DNA-directed RNA polymerase subunit beta''2.7e-1166.67Show/hide
Query:  IAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        I V SI + EDL+EY+GVK+F+PK   QMKVDRF  IPEE  ILPESSS+M+RN
Subjt:  IAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

Q3BAQ2 DNA-directed RNA polymerase subunit beta''2.5e-1266.07Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        GI+ V SI + EDLIEY+G KDF PK Q QMKVD+F  IPEE  ILP SS IM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

Q4VZP3 DNA-directed RNA polymerase subunit beta''1.8e-1576.79Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVKDFKPK QMQMKVDRF  IPEE  ILPESSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

Q68S16 DNA-directed RNA polymerase subunit beta''2.7e-1167.86Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G I V SI + EDLIEY+GVK+F+PK   QMKVDRF  IPEE  ILP SSSIM+RN
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN

Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein4.5e-0955.36Show/hide
Query:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN
        G +   SI + ED+IEY+GV+  K K   +MKVDRF  IPEE  ILPESS+IM++N
Subjt:  GIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTTCGGGAGCTCGAGGAAATGAATCTCAAGTACACCAATTAGAAGGAGTACATCTTGGATCTGTCGATTATGTTGGACGAAGTCCTACTCACGGGGAG
TTGGTCAAATTGAGAGAACCCTTAGGTATTATTGCAGTTCAATCTATTGGAGAATCGGAGGATTTGATTGAGTATCAAGGAGTTAAAGACTTTAAGCCAAAATGC
CAAATGCAAATGAAAGTGGATCGATTTGTTCTCATTCCCGAGGAACGGTGTATTTTACCTGAATCTTCTTCCATAATGTTACGAAACCGTCACAACGCCAAGGCG
CTAACGTTAAATCGGCTGCCTGATAATTTCGGAGCGTCGTGGCACCTGCTACAGCTCACCAGCAGAACTCCTCGGGAAAAAGCGTCGCGGCTGCGCCGAGCATCA
CAACACTGTGGCTTTAGGGGCATTTTGGTCATTTTGGAGTTTTATTTCCTGGTTGATGCTGTTGAACTTCTTTTTGGTCTGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTTCGGGAGCTCGAGGAAATGAATCTCAAGTACACCAATTAGAAGGAGTACATCTTGGATCTGTCGATTATGTTGGACGAAGTCCTACTCACGGGGAG
TTGGTCAAATTGAGAGAACCCTTAGGTATTATTGCAGTTCAATCTATTGGAGAATCGGAGGATTTGATTGAGTATCAAGGAGTTAAAGACTTTAAGCCAAAATGC
CAAATGCAAATGAAAGTGGATCGATTTGTTCTCATTCCCGAGGAACGGTGTATTTTACCTGAATCTTCTTCCATAATGTTACGAAACCGTCACAACGCCAAGGCG
CTAACGTTAAATCGGCTGCCTGATAATTTCGGAGCGTCGTGGCACCTGCTACAGCTCACCAGCAGAACTCCTCGGGAAAAAGCGTCGCGGCTGCGCCGAGCATCA
CAACACTGTGGCTTTAGGGGCATTTTGGTCATTTTGGAGTTTTATTTCCTGGTTGATGCTGTTGAACTTCTTTTTGGTCTGTTTTAG
Protein sequenceShow/hide protein sequence
MSFSGARGNESQVHQLEGVHLGSVDYVGRSPTHGELVKLREPLGIIAVQSIGESEDLIEYQGVKDFKPKCQMQMKVDRFVLIPEERCILPESSSIMLRNRHNAKA
LTLNRLPDNFGASWHLLQLTSRTPREKASRLRRASQHCGFRGILVILEFYFLVDAVELLFGLF