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Clc01G11640 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G11640
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein CLAVATA 3
Genome locationClcChr01:18149720..18151092
RNA-Seq ExpressionClc01G11640
SyntenyClc01G11640
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0033612 - receptor serine/threonine kinase binding (molecular function)
InterPro domainsIPR039818 - CLAVATA3
IPR044962 - CLV3/ESR signal peptide family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054350.1 protein CLAVATA 3 [Cucumis melo var. makuwa]1.7e-1480Show/hide
Query:  ISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP
        +SRKM+ E KKEME+G  GGKR R   EWEQLRRVPSGPDPLHHNGGSPKKPRTP
Subjt:  ISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

KAE8652825.1 hypothetical protein Csa_022700, partial [Cucumis sativus]9.5e-3473.45Show/hide
Query:  MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDY-YCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPL
        MASPSPS      +FLS+LLL  FL++ LFSSDY YCCWRVGRCR VS +L VSRAL +SRKML E KKEME+G  GGKR     EWEQLRRVPSGPDPL
Subjt:  MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDY-YCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPL

Query:  HHNGGSPKKPRTP
        HHNGGSPKKPRTP
Subjt:  HHNGGSPKKPRTP

KAG4981089.1 hypothetical protein JHK85_035047 [Glycine max]1.3e-0637.93Show/hide
Query:  SKFIYSFAFLSILLLILF------LSNNLFSSDYYCCWRVGRCRCVSA----ELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGP
        SKFI++   L +LL +L       LS   FS  Y+ C     C   +A    ++P  + L + +       K   +G+   K    P+ WE LR+VPSGP
Subjt:  SKFIYSFAFLSILLLILF------LSNNLFSSDYYCCWRVGRCRCVSA----ELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGP

Query:  DPLHHNGGSPKKPRTP
        DPLHHNG +PKKP+TP
Subjt:  DPLHHNGGSPKKPRTP

KAG6583691.1 hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia]8.6e-1959.26Show/hide
Query:  SPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGG
        +PS  I+     S+LLLI FLS+N  S+       + R R V    P+ RALQ +RKML+E  KE+E   DGG+RRRP VEW+QLRRVPSGPDPLHHNGG
Subjt:  SPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGG

Query:  SPKKPRTP
        SPKKPRTP
Subjt:  SPKKPRTP

XP_038877536.1 protein CLAVATA 3 [Benincasa hispida]1.4e-3778.95Show/hide
Query:  MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVG--RCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDP
        MA PS SKFI SFAF S+LLLI F    LFSSDYYCCWRV   RCRCVS + PVSRALQISRKMLQE KKEME+G DG KR  P  EWEQLRRVPSGPDP
Subjt:  MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVG--RCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDP

Query:  LHHNGGSPKKPRTP
        LHHNGGSPKKPRTP
Subjt:  LHHNGGSPKKPRTP

TrEMBL top hitse value%identityAlignment
A0A0B2QD91 Uncharacterized protein1.2e-0536.79Show/hide
Query:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSP
        SKFI++   L +LL +L +         Y C+  G       ++P  + L + +       K   +G+   K    P+ WE LR+VPSGPDPLHHNG +P
Subjt:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSP

Query:  KKPRTP
        KKP+TP
Subjt:  KKPRTP

A0A4P1REU9 Uncharacterized protein1.5e-0539.45Show/hide
Query:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRC---RCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNG
        SK I S   L +LL +L +     +SD   C  V  C     V  E+   + L   +      K  +E  +   K    P+ WE LR+VPSGPDPLHHNG
Subjt:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRC---RCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNG

Query:  GSPKKPRTP
        G+PKKP TP
Subjt:  GSPKKPRTP

A0A5A7UGG1 Protein CLAVATA 38.2e-1580Show/hide
Query:  ISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP
        +SRKM+ E KKEME+G  GGKR R   EWEQLRRVPSGPDPLHHNGGSPKKPRTP
Subjt:  ISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

K7LVT1 Uncharacterized protein1.2e-0536.79Show/hide
Query:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSP
        SKFI++   L +LL +L +         Y C+  G       ++P  + L + +       K   +G+   K    P+ WE LR+VPSGPDPLHHNG +P
Subjt:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSP

Query:  KKPRTP
        KKP+TP
Subjt:  KKPRTP

V7BVP2 Uncharacterized protein1.5e-0537.74Show/hide
Query:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSP
        SKFI++   L +LL +L +         Y C+  G    V  ++P  +AL + +      K  +++ +   K    P+ WE LR+VPSGPDPLHHNG +P
Subjt:  SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSP

Query:  KKPRTP
        KKP+TP
Subjt:  KKPRTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGATTATTATTGCTG
CTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAG
CTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGA
ACTCCTTGA
mRNA sequenceShow/hide mRNA sequence
CAACAATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGATTATTAT
TGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAA
GGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGC
CTAGAACTCCTTGAACATTGAAACGATGTCGTATTATCAAACTTTTCAGCCAATAATATCTTTGCTCTAAATCTCGTCTATGAGAAGAAGAGGAAGAAGAAGGATAAAAG
AACTTCACATTTTGAAAGTAGGGTTTTTTGGCTGATCGATCCCAACAACAAAAACTAAAACCTTCGGATCTTCTGTTGGGTCTATCAATGGTTATTAATTTCTTTTTTTC
TTTTTTCTTTTTTTTCTCTATGAGTTTTGAATTTTTATATATTCATATGAATGATCTCCCCTTGTTCATATATGTTAATGAAAATTGTAGGCTTGGATCTTGGTGAAAAA
GGATGTTTAATTTC
Protein sequenceShow/hide protein sequence
MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPR
TP