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Clc01G12060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCASP-like protein
Genome locationClcChr01:20094318..20099139
RNA-Seq ExpressionClc01G12060
SyntenyClc01G12060
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652815.1 hypothetical protein Csa_023994, partial [Cucumis sativus]2.6e-1880.33Show/hide
Query:  SFHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL
        +F  S L+LWKR SDHFRKSFCKEQQ+ELGW NIF RGLGVTAPKARTRDKPM TA F TL
Subjt:  SFHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL

KAF5470938.1 hypothetical protein F2P56_011422, partial [Juglans regia]3.7e-0460.98Show/hide
Query:  FRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTAL
        FR+SF +E+ K LGWK  F +G+GVT PKARTRDKP++  L
Subjt:  FRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTAL

KAG6583714.1 hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sororia]5.3e-1983.33Show/hide
Query:  FHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL
        F FS L+LW RLSDHFRKSFCKE QKELGWKNIFCRGLGVTAPKARTRDKPM    F TL
Subjt:  FHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL

KAG7019361.1 hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1785.45Show/hide
Query:  LELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL
        L+LW RLSDHFRKSFCKE QKELGWKNIFCRGLGVTAPKARTRDKPM    F TL
Subjt:  LELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL

TKR98526.1 Casparian strip membrane protein [Populus alba]9.7e-0563.04Show/hide
Query:  KRLSDHFRKSF-CKEQQ-KELGWKNIFCRGLGVTAPKARTRDKPMS
        K L   FRKSF C  ++   LGWKN F  G+G+TAPKARTRDKPMS
Subjt:  KRLSDHFRKSF-CKEQQ-KELGWKNIFCRGLGVTAPKARTRDKPMS

TrEMBL top hitse value%identityAlignment
A0A4U5PQ38 CASP-like protein4.7e-0563.04Show/hide
Query:  KRLSDHFRKSF-CKEQQ-KELGWKNIFCRGLGVTAPKARTRDKPMS
        K L   FRKSF C  ++   LGWKN F  G+G+TAPKARTRDKPMS
Subjt:  KRLSDHFRKSF-CKEQQ-KELGWKNIFCRGLGVTAPKARTRDKPMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGATGGCAAAGCTGAAATTGAAGTTAATCATAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGAAGGACATGAGAAG
GTACTTGGGCAACCTGTCATATTCCTATGTGCACATAAAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGGGATGATTTCGACATTAGATGTGTTGA
GCCTTGCTCCAACCCCAACTAAGGTTGTTTTCGACGTTGAGAATGTTGAGCATTGCTCCGCCTCAACTAAGGGAAAAATCCAACATTCCGAGCTTTCTTCTCCTCCAGGT
GAGCATCTTACTCCTCGTCAGTCAACTTTACCATTTCCCCCTTTTAATTCTTCCTTTTTTCTTTCTGGGGTTGTTGATCGGATCTTTTCTTTTCATTTCTCCGGCTTGGA
ATTGTGGAAGCGCCTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGCAGAAGGAGCTGGGCTGGAAGAATATTTTCTGCCGAGGGTTGGGTGTCACTGCTCCCA
AAGCAAGAACTCGTGACAAACCCATGTCTACTGCCTTGTTCTTCACTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGATGGCAAAGCTGAAATTGAAGTTAATCATAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGAAGGACATGAGAAG
GTACTTGGGCAACCTGTCATATTCCTATGTGCACATAAAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGGGATGATTTCGACATTAGATGTGTTGA
GCCTTGCTCCAACCCCAACTAAGGTTGTTTTCGACGTTGAGAATGTTGAGCATTGCTCCGCCTCAACTAAGGGAAAAATCCAACATTCCGAGCTTTCTTCTCCTCCAGGT
GAGCATCTTACTCCTCGTCAGTCAACTTTACCATTTCCCCCTTTTAATTCTTCCTTTTTTCTTTCTGGGGTTGTTGATCGGATCTTTTCTTTTCATTTCTCCGGCTTGGA
ATTGTGGAAGCGCCTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGCAGAAGGAGCTGGGCTGGAAGAATATTTTCTGCCGAGGGTTGGGTGTCACTGCTCCCA
AAGCAAGAACTCGTGACAAACCCATGTCTACTGCCTTGTTCTTCACTCTCTGA
Protein sequenceShow/hide protein sequence
MKDGKAEIEVNHRRLSAQGHEKAREFPQDPVLKDMRRYLGNLSYSYVHIKVDLAGASSLLRIEPGMISTLDVLSLAPTPTKVVFDVENVEHCSASTKGKIQHSELSSPPG
EHLTPRQSTLPFPPFNSSFFLSGVVDRIFSFHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL