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Clc01G12285 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12285
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationClcChr01:21459877..21461423
RNA-Seq ExpressionClc01G12285
SyntenyClc01G12285
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily
IPR044900 - Photosystem II CP43 reaction centre protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABR21943.1 photosystem II CP43 protein, partial [Joinvillea plicata]5.2e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
AFA27430.1 photosystem II CP43 chlorophyll apoprotein, partial [Joinvillea ascendens]5.2e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
QGA85766.1 photosystem II CP43 chlorophyll apoprotein [Inga spectabilis]5.2e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
YP_009193070.1 photosystem II 44 kDa protein [Inga leiocalycina]5.2e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
YP_009972051.1 photosystem II CP43 chlorophyll apoprotein [Butomus umbellatus]5.2e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
TrEMBL top hitse value%identityAlignment
A0A1X9Q1T4 Photosystem II CP43 reaction center protein2.5e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
A0A218KG40 Photosystem II CP43 reaction center protein2.5e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
A0A286SB21 Photosystem II CP43 reaction center protein2.5e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
A0A6H0DZY1 Photosystem II CP43 reaction center protein2.5e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
W8E6V3 Photosystem II CP43 reaction center protein2.5e-3793.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
SwissProt top hitse value%identityAlignment
A6MM32 Photosystem II CP43 reaction center protein9.0e-4092.68Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGAN+GSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
A6MMB8 Photosystem II CP43 reaction center protein9.0e-4092.68Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGAN+GSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
B1A931 Photosystem II CP43 reaction center protein9.0e-4092.68Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGAN+GSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
Q2QD93 Photosystem II CP43 reaction center protein6.9e-4093.9Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGANIGSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
Q7YJX6 Photosystem II CP43 reaction center protein9.0e-4092.68Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        LGALSVFGFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGAN+GSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C2.7e-3990.24Show/hide
Query:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR
        L ALSV GFIACCFVWFNNTAYPSEFYGPTGP+ASQAQAFTFLVRDQRLGAN+GSAQG TGLGKYL+RSPTGEVIFGGE +R
Subjt:  LGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEKLR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGTTTAGGTGCTTTATCTGTTTT
TGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAAAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAG
TTAGAGACCAACGTCTTGGAGCTAACATTGGATCCGCTCAAGGATCTACTGGTTTAGGTAAATATCTAATTCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAG
CTGAGGAAGATAGCACATTTTAGATGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACTTAAGGAGAAAAAATGTAACTCAGAGGTAAATCGTGGTGCTGGAATTCATCAAGAATTGAAGAAGAATTTGGAGCTTCAAGGTTTAGGTGCTTTATCTGTTTT
TGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAAAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAG
TTAGAGACCAACGTCTTGGAGCTAACATTGGATCCGCTCAAGGATCTACTGGTTTAGGTAAATATCTAATTCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAAAAG
CTGAGGAAGATAGCACATTTTAGATGCTATCACATATGGCGATCACTCGCTTCCAGTAAAGATTCAATGCCTTCCGGGAAGACCCCCACAAATACTTAA
Protein sequenceShow/hide protein sequence
MALKEKKCNSEVNRGAGIHQELKKNLELQGLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPKASQAQAFTFLVRDQRLGANIGSAQGSTGLGKYLIRSPTGEVIFGGEK
LRKIAHFRCYHIWRSLASSKDSMPSGKTPTNT