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Clc01G12325 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12325
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDDE Tnp4 domain-containing protein
Genome locationClcChr01:21650599..21652184
RNA-Seq ExpressionClc01G12325
SyntenyClc01G12325
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.9e-1471.43Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVAIFLHIV HD+KNRV RR FARSGET+SRHFN +LN +LRL+++LL++P P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

KAA0050107.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.3e-1576.79Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVAIFLHIV HDVKNRV RR FARSGETVSRHFN +LNA+LRL+++LL++P P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]3.3e-1473.21Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVA+FLHI+ HDVKNR+++++FARSGETVSRHFNI+L AILRL+D LL+KP+P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

XP_008466673.1 PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo]1.9e-1468.97Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTF
        +EEMVA+FLHI+ HDVKNR+++R+F RSGETVSRHFN++L A+LRL+D LL+KP+P F
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTF

XP_030483302.1 protein ALP1-like [Cannabis sativa]2.3e-1577.78Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKP
        +EEMVAIFLHI+ HDVKNR++RRQFARSGETVSRHFN++LNA+L L+D+LL+KP
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKP

TrEMBL top hitse value%identityAlignment
A0A2N9F8R4 DDE Tnp4 domain-containing protein7.2e-1575Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVA+FLHIV HDVKNRV++RQFARSGET+SR FN +LN+I+RLYD LL KP+P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

A0A2N9FLC7 Uncharacterized protein7.2e-1575Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVA+FLHIV HDVKNRV++RQFARSGET+SR FN +LN+I+RLYD LL KP+P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

A0A2N9H5S7 DDE Tnp4 domain-containing protein7.2e-1575Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVA+FLHIV HDVKNRV++RQFARSGET+SR FN +LN+I+RLYD LL KP+P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

A0A5A7U6W3 Putative nuclease HARBI11.1e-1576.79Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP
        +EEMVAIFLHIV HDVKNRV RR FARSGETVSRHFN +LNA+LRL+++LL++P P
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP

A0A803QNC5 Uncharacterized protein1.1e-1577.78Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKP
        +EEMVAIFLHI+ HDVKNR++RRQFARSGETVSRHFN++LNA+L L+D+LL+KP
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.2e-0740.3Show/hide
Query:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTFQPGFLSNIL
        +E  +AIFL I+ H+++ R ++  F  SGET+SRHFN +LNA++ +        K  FQP   S+ L
Subjt:  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTFQPGFLSNIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAA
TATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGA
TACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAA
TATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGA
TACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA
Protein sequenceShow/hide protein sequence
MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTFQPGFLSNILRMMQQRIPGCSIQVSPHLESRWVWVECGAQMY