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Clc01G12560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr01:23509187..23520311
RNA-Seq ExpressionClc01G12560
SyntenyClc01G12560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY17116.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]5.2e-0842.7Show/hide
Query:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-------PSNLHDDGENVEESETKNFDETFVGSKIEDCILVVT
        +CKKQ VV+RSSAE E RALAQG CE IW K ++ ELK+SS GPM+        +++  +  + + ++    D  F+  KIED ++ +T
Subjt:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-------PSNLHDDGENVEESETKNFDETFVGSKIEDCILVVT

RVW61484.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]4.7e-0934.19Show/hide
Query:  KRKGAVLDEIDALMKNNTWEITNLPPGRK--------------------------------------CKKQAVVSRSSAEVELRALAQGICEGIWQKSIL
        K K AV +E+ AL KN  WEIT+LP G+K                                       KKQ+VV+RSSAE E RA+AQGICEGIW   +L
Subjt:  KRKGAVLDEIDALMKNNTWEITNLPPGRK--------------------------------------CKKQAVVSRSSAEVELRALAQGICEGIWQKSIL

Query:  SELKISSEGPM-----EPSNLHDDGENVEESETKN--FDETFVGSKIEDCILVVT
         EL++  + PM       + +      V    TK+   D  F+  KIE+ +  V+
Subjt:  SELKISSEGPM-----EPSNLHDDGENVEESETKN--FDETFVGSKIEDCILVVT

RVW90067.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.2e-0831.73Show/hide
Query:  RSSYPKNHVSNSTSKTSMEDSDLLIAKRKG--AVLDEIDALMKNNTWEITNL-------------------------------------PPG--------
        RS  P N +  +    +  D D+ IA RKG  AV DEI AL KN TWE+++L                                     PPG        
Subjt:  RSSYPKNHVSNSTSKTSMEDSDLLIAKRKG--AVLDEIDALMKNNTWEITNL-------------------------------------PPG--------

Query:  -------------------RKCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----------PSNL--HDDGENVEESETKNFDE
                           +  KKQ+VV+RSSAEVE +ALAQGIC+GIW K +L EL+I  +G                NL  HD  ++VE       D 
Subjt:  -------------------RKCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----------PSNL--HDDGENVEESETKNFDE

Query:  TFVGSKIE
         F+  KIE
Subjt:  TFVGSKIE

XP_016451574.1 PREDICTED: uncharacterized protein LOC107776213 [Nicotiana tabacum]1.1e-0730.59Show/hide
Query:  TNVEKPSKQVQQLK-HNQVTCLSALK-ATKEICSTWIIDFGASDHMTGC-----ESCEMAKLARSSYPKNHVSNSTSKTSMEDS----------DLLIAK
        +N+E+ +  V+  K  ++ T L ALK   +E C +W +D GAS+HM GC     E  E  +  +++ P    +N  S +S E S          + +  K
Subjt:  TNVEKPSKQVQQLK-HNQVTCLSALK-ATKEICSTWIIDFGASDHMTGC-----ESCEMAKLARSSYPKNHVSNSTSKTSMEDS----------DLLIAK

Query:  R-KGAVLDEIDALMKNNTWEITNLPPGRKC--KKQAVVSRSSAEVEL-RALAQGICEGIWQKSILSELKI
        R + A+ +EID++ KNNTWE+T LP G +    K   +++ +A+ ++ R  AQ + +G  ++  +S+ K+
Subjt:  R-KGAVLDEIDALMKNNTWEITNLPPGRKC--KKQAVVSRSSAEVEL-RALAQGICEGIWQKSILSELKI

XP_040988780.1 secreted RxLR effector protein 161-like [Juglans microcarpa x Juglans regia]8.8e-0848.84Show/hide
Query:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----PSNLHDDGENVEESETKN--FDETFVGSKIEDCIL
        + KKQ+VVSRSSAE E RA+A GICEGIW K +L ELKIS+E PM+      S +      V    TK+   D  F+  KIE+ I+
Subjt:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----PSNLHDDGENVEESETKN--FDETFVGSKIEDCIL

TrEMBL top hitse value%identityAlignment
A0A061FJ66 Cysteine-rich RLK (RECEPTOR-like protein kinase) 82.5e-0842.7Show/hide
Query:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-------PSNLHDDGENVEESETKNFDETFVGSKIEDCILVVT
        +CKKQ VV+RSSAE E RALAQG CE IW K ++ ELK+SS GPM+        +++  +  + + ++    D  F+  KIED ++ +T
Subjt:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-------PSNLHDDGENVEESETKNFDETFVGSKIEDCILVVT

A0A1S3YH72 uncharacterized protein LOC1077762135.6e-0830.59Show/hide
Query:  TNVEKPSKQVQQLK-HNQVTCLSALK-ATKEICSTWIIDFGASDHMTGC-----ESCEMAKLARSSYPKNHVSNSTSKTSMEDS----------DLLIAK
        +N+E+ +  V+  K  ++ T L ALK   +E C +W +D GAS+HM GC     E  E  +  +++ P    +N  S +S E S          + +  K
Subjt:  TNVEKPSKQVQQLK-HNQVTCLSALK-ATKEICSTWIIDFGASDHMTGC-----ESCEMAKLARSSYPKNHVSNSTSKTSMEDS----------DLLIAK

Query:  R-KGAVLDEIDALMKNNTWEITNLPPGRKC--KKQAVVSRSSAEVEL-RALAQGICEGIWQKSILSELKI
        R + A+ +EID++ KNNTWE+T LP G +    K   +++ +A+ ++ R  AQ + +G  ++  +S+ K+
Subjt:  R-KGAVLDEIDALMKNNTWEITNLPPGRKC--KKQAVVSRSSAEVEL-RALAQGICEGIWQKSILSELKI

A0A438FNF0 Retrovirus-related Pol polyprotein from transposon RE22.3e-0934.19Show/hide
Query:  KRKGAVLDEIDALMKNNTWEITNLPPGRK--------------------------------------CKKQAVVSRSSAEVELRALAQGICEGIWQKSIL
        K K AV +E+ AL KN  WEIT+LP G+K                                       KKQ+VV+RSSAE E RA+AQGICEGIW   +L
Subjt:  KRKGAVLDEIDALMKNNTWEITNLPPGRK--------------------------------------CKKQAVVSRSSAEVELRALAQGICEGIWQKSIL

Query:  SELKISSEGPM-----EPSNLHDDGENVEESETKN--FDETFVGSKIEDCILVVT
         EL++  + PM       + +      V    TK+   D  F+  KIE+ +  V+
Subjt:  SELKISSEGPM-----EPSNLHDDGENVEESETKN--FDETFVGSKIEDCILVVT

A0A438I042 Retrovirus-related Pol polyprotein from transposon RE12.5e-0831.73Show/hide
Query:  RSSYPKNHVSNSTSKTSMEDSDLLIAKRKG--AVLDEIDALMKNNTWEITNL-------------------------------------PPG--------
        RS  P N +  +    +  D D+ IA RKG  AV DEI AL KN TWE+++L                                     PPG        
Subjt:  RSSYPKNHVSNSTSKTSMEDSDLLIAKRKG--AVLDEIDALMKNNTWEITNL-------------------------------------PPG--------

Query:  -------------------RKCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----------PSNL--HDDGENVEESETKNFDE
                           +  KKQ+VV+RSSAEVE +ALAQGIC+GIW K +L EL+I  +G                NL  HD  ++VE       D 
Subjt:  -------------------RKCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----------PSNL--HDDGENVEESETKNFDE

Query:  TFVGSKIE
         F+  KIE
Subjt:  TFVGSKIE

A0A6A1VLR9 Copia protein7.3e-0847.67Show/hide
Query:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----PSNLHDDGENVEESETKN--FDETFVGSKIEDCIL
        + KKQ+VVSRSSAE E RA+A GICEGIW + +L ELKIS E PM+      S ++     V    TK+   D  F+  KIE+ I+
Subjt:  KCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPME-----PSNLHDDGENVEESETKN--FDETFVGSKIEDCIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGAGGAACTGCAAACTCCGAACATGAAGGATCGGTGTTAATTGCTCGAAATCTGGGTAATGAGAAAACCAGGCAACAAAAGAAGTGTGTTGGGATATTCATGGA
AAACCTCCAAATTGGAAGCCAAACAAAGGAATGGGGGACAAATGTGGAAAAGCCTTCGAAGCAAGTTCAACAATTGAAGCACAATCAGGTAACTTGCCTTAGTGCCCTTA
AGGCAACAAAAGAAATTTGTAGTACTTGGATTATTGATTTTGGAGCATCAGATCACATGACAGGTTGTGAGTCTTGTGAAATGGCAAAATTGGCTCGATCTTCATATCCA
AAAAATCATGTCTCCAACTCCACATCGAAAACCTCTATGGAAGATAGTGATCTTCTTATTGCAAAACGCAAAGGGGCTGTATTGGACGAAATAGATGCCCTAATGAAGAA
CAACACATGGGAAATAACAAACCTACCCCCGGGAAGAAAATGTAAGAAACAAGCAGTTGTATCTAGGAGTAGTGCTGAAGTTGAACTAAGGGCACTAGCTCAAGGAATAT
GTGAAGGAATTTGGCAAAAAAGCATCCTATCAGAACTTAAAATCTCATCAGAAGGGCCAATGGAGCCTAGTAATCTTCACGATGATGGTGAAAACGTGGAGGAGTCTGAA
ACCAAGAATTTTGATGAAACTTTTGTTGGTTCGAAGATAGAAGATTGCATATTAGTTGTCACGGGTTTTGAAAGAGGAGCCGGGCAAGGTTTTCAGATGGGGAGAGAATA
TTGGGAAATTGCTATTTCTAACTCAAAAGAAATTAGAGAGTACTGTAAAAGAAAATGGACTCTAGTGAAGAAGATGGCTCAGGGAAGAAGACAATGTGGTTTGAGTGTTG
AGAAAGATGGTTTTTCGAGCTTAGTGTCACGGGATCACAATTTTCCTACGACCTACGTGCGGCACTTGGTGCTAAGGAGACAACCAAGTAAGCCTTTTGAGGAGCGTCCG
GGCTTCTCCAGAGAAATCACGACCCTTCTCGAGTGGTCGGGATCCTTCCAGGGCCGTCAGGCTCTTCTAGGCCATTCGCGCGCCTTTGAGCATTCTCCAGACTTGTCAAC
GTCTATCTTGGTCGTTCTAGACTTTCCTAAGTCTTTCGGTCACGCGTTCACGGACATTTGCCTCGCGGTGCGCCCAGCGATGCGTCGGGCGCGGCCTTGCCCAGCGATGC
GTCGAGTGCAGCCTTGCCCAGCGATGCGTCCAGTGTGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGAGGAACTGCAAACTCCGAACATGAAGGATCGGTGTTAATTGCTCGAAATCTGGGTAATGAGAAAACCAGGCAACAAAAGAAGTGTGTTGGGATATTCATGGA
AAACCTCCAAATTGGAAGCCAAACAAAGGAATGGGGGACAAATGTGGAAAAGCCTTCGAAGCAAGTTCAACAATTGAAGCACAATCAGGTAACTTGCCTTAGTGCCCTTA
AGGCAACAAAAGAAATTTGTAGTACTTGGATTATTGATTTTGGAGCATCAGATCACATGACAGGTTGTGAGTCTTGTGAAATGGCAAAATTGGCTCGATCTTCATATCCA
AAAAATCATGTCTCCAACTCCACATCGAAAACCTCTATGGAAGATAGTGATCTTCTTATTGCAAAACGCAAAGGGGCTGTATTGGACGAAATAGATGCCCTAATGAAGAA
CAACACATGGGAAATAACAAACCTACCCCCGGGAAGAAAATGTAAGAAACAAGCAGTTGTATCTAGGAGTAGTGCTGAAGTTGAACTAAGGGCACTAGCTCAAGGAATAT
GTGAAGGAATTTGGCAAAAAAGCATCCTATCAGAACTTAAAATCTCATCAGAAGGGCCAATGGAGCCTAGTAATCTTCACGATGATGGTGAAAACGTGGAGGAGTCTGAA
ACCAAGAATTTTGATGAAACTTTTGTTGGTTCGAAGATAGAAGATTGCATATTAGTTGTCACGGGTTTTGAAAGAGGAGCCGGGCAAGGTTTTCAGATGGGGAGAGAATA
TTGGGAAATTGCTATTTCTAACTCAAAAGAAATTAGAGAGTACTGTAAAAGAAAATGGACTCTAGTGAAGAAGATGGCTCAGGGAAGAAGACAATGTGGTTTGAGTGTTG
AGAAAGATGGTTTTTCGAGCTTAGTGTCACGGGATCACAATTTTCCTACGACCTACGTGCGGCACTTGGTGCTAAGGAGACAACCAAGTAAGCCTTTTGAGGAGCGTCCG
GGCTTCTCCAGAGAAATCACGACCCTTCTCGAGTGGTCGGGATCCTTCCAGGGCCGTCAGGCTCTTCTAGGCCATTCGCGCGCCTTTGAGCATTCTCCAGACTTGTCAAC
GTCTATCTTGGTCGTTCTAGACTTTCCTAAGTCTTTCGGTCACGCGTTCACGGACATTTGCCTCGCGGTGCGCCCAGCGATGCGTCGGGCGCGGCCTTGCCCAGCGATGC
GTCGAGTGCAGCCTTGCCCAGCGATGCGTCCAGTGTGTGATTGA
Protein sequenceShow/hide protein sequence
MLGGTANSEHEGSVLIARNLGNEKTRQQKKCVGIFMENLQIGSQTKEWGTNVEKPSKQVQQLKHNQVTCLSALKATKEICSTWIIDFGASDHMTGCESCEMAKLARSSYP
KNHVSNSTSKTSMEDSDLLIAKRKGAVLDEIDALMKNNTWEITNLPPGRKCKKQAVVSRSSAEVELRALAQGICEGIWQKSILSELKISSEGPMEPSNLHDDGENVEESE
TKNFDETFVGSKIEDCILVVTGFERGAGQGFQMGREYWEIAISNSKEIREYCKRKWTLVKKMAQGRRQCGLSVEKDGFSSLVSRDHNFPTTYVRHLVLRRQPSKPFEERP
GFSREITTLLEWSGSFQGRQALLGHSRAFEHSPDLSTSILVVLDFPKSFGHAFTDICLAVRPAMRRARPCPAMRRVQPCPAMRPVCD