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Clc01G12590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionChromo domain-containing protein
Genome locationClcChr01:23525056..23525653
RNA-Seq ExpressionClc01G12590
SyntenyClc01G12590
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0019538 - protein metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140096 - catalytic activity, acting on a protein (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV01859.1 hypothetical protein [Tanacetum cinerariifolium]1.6e-0549.18Show/hide
Query:  MTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR
        + T YD+ +  I++   +  + VPS+ EYL+KW+ LP+SEASWE  TY  SL TRSR+I R
Subjt:  MTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR

GEX59468.1 chromo domain-like [Tanacetum cinerariifolium]2.1e-0549.18Show/hide
Query:  MTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR
        + T YD+ +  I ++  +  + VPS+ EYL+KW+ LP+SEASWE  TY  SL TRSR+I R
Subjt:  MTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKDTYGNSL-TRSRNIGR

KAA0025963.1 uncharacterized protein E6C27_scaffold34G002780 [Cucumis melo var. makuwa]1.2e-0553.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ TK+D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

KAA0033203.1 polyprotein [Cucumis melo var. makuwa]1.6e-0553.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE+D
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

KAA0042139.1 uncharacterized protein E6C27_scaffold67G006280 [Cucumis melo var. makuwa]3.6e-0551.06Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ4 Uncharacterized protein6.0e-0653.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ TK+D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

A0A5A7SS05 Polyprotein7.8e-0653.19Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE+D
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

A0A5D3BX70 Chromo domain-containing protein1.7e-0551.06Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

A0A5D3BZR4 Reverse transcriptase2.3e-0551.06Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

A0A5D3D359 Uncharacterized protein1.7e-0551.06Show/hide
Query:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD
        G+ T++D+ I  I+A  ++  + VPSH EYL+ W+GLPESEASWE++
Subjt:  GMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAATGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGGCAAGG
ACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTAGTATCATCGC
AGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTGGAGAAGGATGCGTCA
ACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGCAAGGCTGCGTCCGACGAATC
ACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGACAACCAAATATGACAAGATAATTGCCACCATTGTGGCCCATATAAGGGTAAGCAGTAAATGTGTCCCAAGTCATTTTGAATATCTCGTAAAGTGGCAAGG
ACTCCCGGAGTCAGAAGCAAGCTGGGAAAAGGACACCTATGGCAATTCCCTGACAAGATCTCGAAATATTGGCAGGGGCCCCGCGACGAGGGCGTCGCTAGTATCATCGC
AGCCAACAAGAAGACCTATGCATCTGCCGCACCCCACCGGCACGCATAGCCTAGAACGTCCAATAAAGAGCTGCGCGCATAAGGGAGGACGAGTGGAGAAGGATGCGTCA
ACCCTAGTCAATCGCACACTAGACGCATCGCTAGGCAACGCCGCGTCCCACGCATCGCTGAGCAAGGCTGCGTTCGACGCATTGCTGAGCAAGGCTGCGTCCGACGAATC
ACTAGACAAGGTTGCGTCCGACGCATCGCTGAACGCACCGCAAGGCAAATGTCCGTGA
Protein sequenceShow/hide protein sequence
MGMTTKYDKIIATIVAHIRVSSKCVPSHFEYLVKWQGLPESEASWEKDTYGNSLTRSRNIGRGPATRASLVSSQPTRRPMHLPHPTGTHSLERPIKSCAHKGGRVEKDAS
TLVNRTLDASLGNAASHASLSKAAFDALLSKAASDESLDKVASDASLNAPQGKCP