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Clc01G12610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPMD domain-containing protein
Genome locationClcChr01:23546254..23551243
RNA-Seq ExpressionClc01G12610
SyntenyClc01G12610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]4.1e-2753.51Show/hide
Query:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVEVP  +G+  W+L+S IH+ AP+S   LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFTD
         T+ KVPGEF FTD
Subjt:  STIVKVPGEFTFTD

KAA0048380.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.2e-2752.17Show/hide
Query:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR
        TMVYF E   S    LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVE+P  +G+  W+L+S IH+ AP+S   LTLG+R++EG+TR
Subjt:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR

Query:  WSTIVKVPGEFTFTD
        W T+ KVPGEF FTD
Subjt:  WSTIVKVPGEFTFTD

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]1.6e-2652.63Show/hide
Query:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL +R+Q  + GL+  +E P  G F+D W  LD++  LP LSVE+P  +G+  WIL+S IH+ AP+S   LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFTD
         T+ KVPGEF FTD
Subjt:  STIVKVPGEFTFTD

KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.1e-2753.51Show/hide
Query:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVE+P  +G+  WIL+S IH+ AP+S   LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFTD
         T+ KVPGEF FTD
Subjt:  STIVKVPGEFTFTD

KAA0057574.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.0e-2753.04Show/hide
Query:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR
        TMVYF E   SG   LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVEVP  +G+  W+L+S IH+ A +S   LTLG+R++EG+TR
Subjt:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR

Query:  WSTIVKVPGEFTFTD
        W T+ KVPGEF FTD
Subjt:  WSTIVKVPGEFTFTD

TrEMBL top hitse value%identityAlignment
A0A5A7TFC8 PMD domain-containing protein7.6e-2753.04Show/hide
Query:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR
        TMVYF E   SG   LVIL +R+Q  + GL+  VE    G F+D W  LD++  LP LSVEVP  +G+  W+L+S IH+ AP+S   LTLG+R++EG+TR
Subjt:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR

Query:  WSTIVKVPGEFTFTD
        W T+ KVPGEF FTD
Subjt:  WSTIVKVPGEFTFTD

A0A5A7TX42 Uncharacterized protein2.0e-2753.51Show/hide
Query:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVEVP  +G+  W+L+S IH+ AP+S   LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFTD
         T+ KVPGEF FTD
Subjt:  STIVKVPGEFTFTD

A0A5A7TZ08 Putative mitochondrial protein4.5e-2752.17Show/hide
Query:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR
        TMVYF E   S    LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVE+P  +G+  W+L+S IH+ AP+S   LTLG+R++EG+TR
Subjt:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR

Query:  WSTIVKVPGEFTFTD
        W T+ KVPGEF FTD
Subjt:  WSTIVKVPGEFTFTD

A0A5A7UET3 Putative mitochondrial protein2.0e-2753.51Show/hide
Query:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW
        MVYF E   SG   LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVE+P  +G+  WIL+S IH+ AP+S   LTLG+R++EG+TRW
Subjt:  MVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETRW

Query:  STIVKVPGEFTFTD
         T+ KVPGEF FTD
Subjt:  STIVKVPGEFTFTD

A0A5A7UR46 Putative mitochondrial protein3.4e-2753.04Show/hide
Query:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR
        TMVYF E   SG   LVIL +R+Q  + GL+  VE P  G F+D W  LD++  LP LSVEVP  +G+  W+L+S IH+ A +S   LTLG+R++EG+TR
Subjt:  TMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKVWILRSPIHDTAPSSDPLLTLGRRMLEGETR

Query:  WSTIVKVPGEFTFTD
        W T+ KVPGEF FTD
Subjt:  WSTIVKVPGEFTFTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTGAAACGAATACTGGACGAAGATGAAAAAAGCGACAGCTGCTGTAACTCTCGGAGAAAAATAGAAGAAGAAGTTAGTGATACTTGCAGAACTCAATGGAATAA
TGGAAGAATGTGTGAGAGTGACCGTCCATTAGTACCCTTGCATTCAATTTTGTTGATACCAAAAGAAAATAGGAAAAATTCCCCAAATCGCGCGCAAAAAATCCCGTCGT
CCTTTGGCTATATATATGTCCGGGCGTACAATGGTTTCTTCATTCCAAACTTGCTCCGCCTTTACTGCTACAACTGCTGTTCGGACATTGCCGGAATATCACGCGATTCT
CCTGCTGTTATTGGAAGCCGTGGAACGCCGCCGGAGGTAGATCGTCGTCGCGTTGCTCTTCTATCGCCGGGTAATTCCTTCCACCGCAGTTTTCGTCGTCCACCACAAGG
TTACCACTGGACAATGGTTTACTTTGCGGAGCATGTCTCGTCTGGAAAAACACAGCTCGTGATCCTTGTAGAGAGGCACCAGACTATACAGAGTGGACTTACCTTTACTG
TGGAGGCTCCCCTAACTGGTTTCTTTTCAGATGTTTGGCTAGAGCTGGATGACGATATGACCCTCCCCGAGTTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGTA
TGGATCCTAAGGTCGCCGATTCATGACACGGCCCCTTCCTCGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACCATTGTGAAAGT
CCCAGGTGAATTCACTTTTACCGACTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCTGAAACGAATACTGGACGAAGATGAAAAAAGCGACAGCTGCTGTAACTCTCGGAGAAAAATAGAAGAAGAAGTTAGTGATACTTGCAGAACTCAATGGAATAA
TGGAAGAATGTGTGAGAGTGACCGTCCATTAGTACCCTTGCATTCAATTTTGTTGATACCAAAAGAAAATAGGAAAAATTCCCCAAATCGCGCGCAAAAAATCCCGTCGT
CCTTTGGCTATATATATGTCCGGGCGTACAATGGTTTCTTCATTCCAAACTTGCTCCGCCTTTACTGCTACAACTGCTGTTCGGACATTGCCGGAATATCACGCGATTCT
CCTGCTGTTATTGGAAGCCGTGGAACGCCGCCGGAGGTAGATCGTCGTCGCGTTGCTCTTCTATCGCCGGGTAATTCCTTCCACCGCAGTTTTCGTCGTCCACCACAAGG
TTACCACTGGACAATGGTTTACTTTGCGGAGCATGTCTCGTCTGGAAAAACACAGCTCGTGATCCTTGTAGAGAGGCACCAGACTATACAGAGTGGACTTACCTTTACTG
TGGAGGCTCCCCTAACTGGTTTCTTTTCAGATGTTTGGCTAGAGCTGGATGACGATATGACCCTCCCCGAGTTATCTGTTGAGGTGCCTTTTCATCAGGGGGAAAAGGTA
TGGATCCTAAGGTCGCCGATTCATGACACGGCCCCTTCCTCGGATCCATTGTTAACTCTCGGGCGGCGCATGCTGGAAGGCGAGACCCGCTGGAGCACCATTGTGAAAGT
CCCAGGTGAATTCACTTTTACCGACTACTAG
Protein sequenceShow/hide protein sequence
MLLKRILDEDEKSDSCCNSRRKIEEEVSDTCRTQWNNGRMCESDRPLVPLHSILLIPKENRKNSPNRAQKIPSSFGYIYVRAYNGFFIPNLLRLYCYNCCSDIAGISRDS
PAVIGSRGTPPEVDRRRVALLSPGNSFHRSFRRPPQGYHWTMVYFAEHVSSGKTQLVILVERHQTIQSGLTFTVEAPLTGFFSDVWLELDDDMTLPELSVEVPFHQGEKV
WILRSPIHDTAPSSDPLLTLGRRMLEGETRWSTIVKVPGEFTFTDY