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Clc01G12690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationClcChr01:24200724..24202222
RNA-Seq ExpressionClc01G12690
SyntenyClc01G12690
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-3972.58Show/hide
Query:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW
        VLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ +  H+LE QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLW
Subjt:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW

Query:  RNHSVEEATRETEQMIK-KYPHLF
        RNH+ EEAT ETEQ +K +YPHLF
Subjt:  RNHSVEEATRETEQMIK-KYPHLF

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.0e-1435.03Show/hide
Query:  REAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIG--------------FQ---------------------RSKSMDY----STRKVLPSNEGLM
        R AQRL S +++   DPE+KYGIER KAL A+ F GT                F+                      +K  D+     +R+ + S+   M
Subjt:  REAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIG--------------FQ---------------------RSKSMDY----STRKVLPSNEGLM

Query:  SVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVAVSVKWDKFSQVIKS
        +V +YE+K+T  SKYAT ++ D+V RCKRF E L+ +IRTPV     W+ FS+++++
Subjt:  SVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVAVSVKWDKFSQVIKS

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.9e-3973.39Show/hide
Query:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW
        VLRFGRK KLSPRFIGPYEILERIGPVAYRL    E+S+IH+ FHVS+LR+YI D +H+LE QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLW
Subjt:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW

Query:  RNHSVEEATRETEQMIK-KYPHLF
        RN++ EEA  ETEQ +K KYPHLF
Subjt:  RNHSVEEATRETEQMIK-KYPHLF

KAA0038428.1 Chromo domain-containing protein [Cucumis melo var. makuwa]3.8e-3867.46Show/hide
Query:  VGVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKV
        +GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +HVL+VQP+ELKEDLSY+E+ +QILD KEQVLR K+I LVKV
Subjt:  VGVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKV

Query:  LWRNHSVEEATRETE-QMIKKYPHLF
        LW +H +EEAT E+E QM + YP LF
Subjt:  LWRNHSVEEATRETE-QMIKKYPHLF

KAA0042458.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.0e-3871.9Show/hide
Query:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL
        GVLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ D +H+LE QP++LKE+LSY+E+ IQILD+KEQVLR KVI LVKVL
Subjt:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL

Query:  WRNHSVEEATRETEQMIKKYP
        WRNH+ EEAT E EQ +K  P
Subjt:  WRNHSVEEATRETEQMIKKYP

KAA0054352.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-3868Show/hide
Query:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL
        GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +HVL+VQP ELKEDLSY+E+ +QILD KEQVLR K I LVKVL
Subjt:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL

Query:  WRNHSVEEATRETEQMIKK-YPHLF
        WR+H +EEAT E+E  I++ YP LF
Subjt:  WRNHSVEEATRETEQMIKK-YPHLF

TrEMBL top hitse value%identityAlignment
A0A5A7T6E5 Chromo domain-containing protein1.8e-3867.46Show/hide
Query:  VGVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKV
        +GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +HVL+VQP+ELKEDLSY+E+ +QILD KEQVLR K+I LVKV
Subjt:  VGVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKV

Query:  LWRNHSVEEATRETE-QMIKKYPHLF
        LW +H +EEAT E+E QM + YP LF
Subjt:  LWRNHSVEEATRETE-QMIKKYPHLF

A0A5A7UF07 Reverse transcriptase1.1e-3868Show/hide
Query:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL
        GVLRFGRKGKLSPR+IGPY+I+ER+GP AYRL    E+++IH+ FHVS+LR+YI D +HVL+VQP ELKEDLSY+E+ +QILD KEQVLR K I LVKVL
Subjt:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL

Query:  WRNHSVEEATRETEQMIKK-YPHLF
        WR+H +EEAT E+E  I++ YP LF
Subjt:  WRNHSVEEATRETEQMIKK-YPHLF

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.2e-3972.58Show/hide
Query:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW
        VLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ +  H+LE QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLW
Subjt:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW

Query:  RNHSVEEATRETEQMIK-KYPHLF
        RNH+ EEAT ETEQ +K +YPHLF
Subjt:  RNHSVEEATRETEQMIK-KYPHLF

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.4e-1435.03Show/hide
Query:  REAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIG--------------FQ---------------------RSKSMDY----STRKVLPSNEGLM
        R AQRL S +++   DPE+KYGIER KAL A+ F GT                F+                      +K  D+     +R+ + S+   M
Subjt:  REAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIG--------------FQ---------------------RSKSMDY----STRKVLPSNEGLM

Query:  SVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVAVSVKWDKFSQVIKS
        +V +YE+K+T  SKYAT ++ D+V RCKRF E L+ +IRTPV     W+ FS+++++
Subjt:  SVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVAVSVKWDKFSQVIKS

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.8e-3973.39Show/hide
Query:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW
        VLRFGRK KLSPRFIGPYEILERIGPVAYRL    E+S+IH+ FHVS+LR+YI D +H+LE QP+ LKE+LSY+E+ IQILD+KEQVLR KVI LVKVLW
Subjt:  VLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLW

Query:  RNHSVEEATRETEQMIK-KYPHLF
        RN++ EEA  ETEQ +K KYPHLF
Subjt:  RNHSVEEATRETEQMIK-KYPHLF

A0A5D3DHF7 Putative DNA/RNA polymerases superfamily protein2.4e-3871.9Show/hide
Query:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL
        GVLRFGRKGKLSPRFI PYEILERIGPVAYRL    E+S+IH+ FHVS+LR+Y+ D +H+LE QP++LKE+LSY+E+ IQILD+KEQVLR KVI LVKVL
Subjt:  GVLRFGRKGKLSPRFIGPYEILERIGPVAYRL----EMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVL

Query:  WRNHSVEEATRETEQMIKKYP
        WRNH+ EEAT E EQ +K  P
Subjt:  WRNHSVEEATRETEQMIKKYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCGGTGATTTTTCGAGAAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGC
AAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGGTTTGATGTCGGTAGTAGAGTATGAAA
GGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCA
GTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGA
GGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATA
AGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTA
AGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAG
GTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTAT
TGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCG
AGGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTACCGGTGATTTTTCGAGAAGCTCAAAGGTTGGCATCTAGTGTTAAAACAACTTTCGGAGATCCCGAGAGGAAGTATGGGATCGAGAGGTTCAAAGCCTTAAGAGC
AAGTATGTTCGAGGGAACAATAGGATTCCAAAGAAGCAAAAGTATGGATTACTCAACTAGAAAAGTGCTTCCGAGTAATGAGGGTTTGATGTCGGTAGTAGAGTATGAAA
GGAAATTCACTGGGTTTTCTAAGTACGCTACTAGCATAGTCATAGATAAAGTTAATAGGTGCAAAAGGTTTGTGGAAGAATTAAGAAGTAAAATTCGTACTCCCGTAGCA
GTTAGTGTTAAGTGGGACAAGTTTTCCCAAGTTATTAAAAGTCGCTATGAGAGTGGAGGAGAATTTGGAAAGACAAGCGGCGGAGGAAGAAATGAATGTATAATACGGGA
GGAAAAAGTGGAAAGTAAGAAATGTATCTCCAGGATTTCAAAGAACAATTCGTCTAAGTCGGGAGTAGAACAAAGTGTGTCAACAGGAGTTAGGATTCTTAACTTGAATA
AGAGACCATGGTGTGAAGATTGTAGAAGATATCACACAAGACGGTGTTTCGAAAATTGGATGTTTGTTATGGTTGTGGGAGTTTTAAGGTTTGGTAGGAAAGGGAAGCTA
AGTCCGAGATTTATTGGACCTTATGAGATTCTGGAAAGGATTGGACCAGTGGCTTACAGATTGGAGATGTCCAAGATTCATAACAAATTTCATGTTTCAGTGTTGAGGAG
GTATATTCTCGATCTTACTCACGTATTAGAAGTACAACCATTAGAGTTGAAAGAAGATTTGAGTTATAAAGAAAAATGGATCCAGATACTAGACGAGAAGGAACAAGTAT
TGAGAACTAAAGTGATTCTGTTGGTAAAGGTGCTTTGGAGGAATCATAGTGTTGAAGAAGCTACTCGGGAAACTGAGCAAATGATCAAGAAGTATCCACATTTGTTTCCG
AGGAATTAA
Protein sequenceShow/hide protein sequence
MLPVIFREAQRLASSVKTTFGDPERKYGIERFKALRASMFEGTIGFQRSKSMDYSTRKVLPSNEGLMSVVEYERKFTGFSKYATSIVIDKVNRCKRFVEELRSKIRTPVA
VSVKWDKFSQVIKSRYESGGEFGKTSGGGRNECIIREEKVESKKCISRISKNNSSKSGVEQSVSTGVRILNLNKRPWCEDCRRYHTRRCFENWMFVMVVGVLRFGRKGKL
SPRFIGPYEILERIGPVAYRLEMSKIHNKFHVSVLRRYILDLTHVLEVQPLELKEDLSYKEKWIQILDEKEQVLRTKVILLVKVLWRNHSVEEATRETEQMIKKYPHLFP
RN