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Clc01G12810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr01:24546685..24547194
RNA-Seq ExpressionClc01G12810
SyntenyClc01G12810
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]4.4e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

XP_038882325.1 uncharacterized protein LOC120073574 [Benincasa hispida]2.8e-6174.38Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD K RA EFQ+GDKVLIKLRP+QFRFRGQ+ QR+VRKYEGPV+VIEKVG+ SYRVQLPSWMKIHPVIHVS LKPYHPDP DE+RN++ RPPVTMK
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ
        +  EK + +IL  +TRR+GRPRR+L EFLVKW+DL +EEISWERA+D ++A   IA FEQ
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQ

XP_038885809.1 uncharacterized protein LOC120076104 [Benincasa hispida]2.5e-5475.89Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRRA EFQ+GDKVLIKLRP++FRFRGQR QR+VRKYEGPV+VIEKVG+ SYRVQLPSWMKIHPVIHVS LKPYH DP DE+RN++ RPPVTMK
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEIS
        +  EK + +IL  + RR+GRPRR+L EFLVKW+DL +EEIS
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEIS

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase2.2e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5A7UXR6 Reverse transcriptase2.2e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5D3BYE6 Reverse transcriptase2.2e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5D3C4R1 Reverse transcriptase2.2e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

A0A5D3DBE0 Reverse transcriptase2.2e-5161.9Show/hide
Query:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK
        MKKWAD KRR  EF++GD+VLIKLRP+Q RFRG++ QR+VRKYEGPV+V++KVG  SYRV LP+WMKI+PVIHVSNLKPYH D  D +RNVVTRP + + 
Subjt:  MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMK

Query:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST
           +K ++EILA + RR  RP R + E+LVKW++L  EE SWER EDL++   +I +F+ R LTGTST
Subjt:  NPTEKVIDEILANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCATGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCA
AAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATG
TGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATA
CTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGA
CCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGTGGGCAGACATGAAGCGCAGGGCCCATGAGTTCCAATCTGGAGACAAAGTACTGATTAAGTTGCGCCCGAAACAGTTTCGGTTTCGAGGACAAAGAGGCCA
AAGGGTTGTGAGGAAATACGAAGGACCAGTGGATGTGATTGAGAAAGTCGGAAAGGCCTCATATCGGGTTCAGTTACCCTCATGGATGAAGATTCATCCTGTCATACATG
TGAGTAACTTGAAGCCTTACCATCCTGACCCCAACGACGAACGACGTAATGTGGTGACTCGCCCTCCCGTCACTATGAAGAACCCAACAGAAAAAGTGATCGATGAGATA
CTTGCTAACAAAACCCGCCGCGTGGGGAGACCAAGACGAGATCTGAAAGAATTCCTGGTGAAGTGGAGAGACCTCCTAGAAGAAGAGATCAGTTGGGAGCGCGCTGAAGA
CCTGCAGTCAGCTACCGTTCAAATTGCTGAGTTCGAGCAGAGACTATTGACAGGGACGTCAACCAATTAA
Protein sequenceShow/hide protein sequence
MKKWADMKRRAHEFQSGDKVLIKLRPKQFRFRGQRGQRVVRKYEGPVDVIEKVGKASYRVQLPSWMKIHPVIHVSNLKPYHPDPNDERRNVVTRPPVTMKNPTEKVIDEI
LANKTRRVGRPRRDLKEFLVKWRDLLEEEISWERAEDLQSATVQIAEFEQRLLTGTSTN