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Clc01G12830 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G12830
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransport and Golgi organization 2-like protein
Genome locationClcChr01:24567239..24572417
RNA-Seq ExpressionClc01G12830
SyntenyClc01G12830
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052070.1 transport and Golgi organization 2-like protein [Cucumis melo var. makuwa]7.8e-1264.91Show/hide
Query:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Subjt:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

KAF3973804.1 hypothetical protein CMV_002802 [Castanea mollissima]8.0e-0955.93Show/hide
Query:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        P + AQ L L F E+L    +GEIP K  +E+LMRD VKADE KLPHICS D++ +LS+
Subjt:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

XP_008462211.1 PREDICTED: transport and Golgi organization 2 homolog [Cucumis melo]7.8e-1264.91Show/hide
Query:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Subjt:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

XP_011654181.1 transport and Golgi organization 2 homolog [Cucumis sativus]3.3e-1063.16Show/hide
Query:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        +  Q LRLKFNEQL  +AEGEIP+K  +ERLMRD VKADE KLP I SPD++ + S+
Subjt:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

XP_022153121.1 transport and Golgi organization 2 homolog [Momordica charantia]5.0e-1167.24Show/hide
Query:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLS
        P + AQ LRLKFNEQL     GEIP K  IERLMRD VKADE KLPHICS D++  LS
Subjt:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLS

TrEMBL top hitse value%identityAlignment
A0A0A0LSJ0 Sterile domain-containing protein1.6e-1063.16Show/hide
Query:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        +  Q LRLKFNEQL  +AEGEIP+K  +ERLMRD VKADE KLP I SPD++ + S+
Subjt:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

A0A1S3CGF4 transport and Golgi organization 2 homolog3.8e-1264.91Show/hide
Query:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Subjt:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

A0A5A7UA61 Transport and Golgi organization 2-like protein3.8e-1264.91Show/hide
Query:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Subjt:  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

A0A5N6RBW6 Uncharacterized protein3.9e-0955.93Show/hide
Query:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN
        P + AQ LRL F EQL  + +GE+P K   E+LMRD VKADE KLP ICS D++ +LS+
Subjt:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN

A0A6J1DFX0 transport and Golgi organization 2 homolog2.4e-1167.24Show/hide
Query:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLS
        P + AQ LRLKFNEQL     GEIP K  IERLMRD VKADE KLPHICS D++  LS
Subjt:  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAAAGCAGACGAGAGGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGGAATGGTGGCTTTTACTGCCGTCGATTGCTTGGTAGGTGGTATCGTTACACT
GGATTTGGGCTTTGGTAGGGGAGGGCTCCTTCCAACTTATATGGCGCAACACTTGAGGCTAAAATTTAATGAACAGCTTCGTGCATTTGCCGAAGGTGAAATACCTAAGA
AAGGGTGGATTGAGAGGTTAATGAGGGACGTCGTTAAAGCTGATGAAGGCAAACTTCCTCATATATGCTCCCCTGACTTCGACCCGTCTTTGTCCAATTTCACACCCTTC
TGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAAAGCAGACGAGAGGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGGAATGGTGGCTTTTACTGCCGTCGATTGCTTGGTAGGTGGTATCGTTACACT
GGATTTGGGCTTTGGTAGGGGAGGGCTCCTTCCAACTTATATGGCGCAACACTTGAGGCTAAAATTTAATGAACAGCTTCGTGCATTTGCCGAAGGTGAAATACCTAAGA
AAGGGTGGATTGAGAGGTTAATGAGGGACGTCGTTAAAGCTGATGAAGGCAAACTTCCTCATATATGCTCCCCTGACTTCGACCCGTCTTTGTCCAATTTCACACCCTTC
TGGTAA
Protein sequenceShow/hide protein sequence
MLQSRREGTLKPSLAALTAGMVAFTAVDCLVGGIVTLDLGFGRGGLLPTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSNFTPF
W