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Clc01G13535 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G13535
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr01:26065303..26065818
RNA-Seq ExpressionClc01G13535
SyntenyClc01G13535
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.1e-2241.89Show/hide
Query:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGI--------------------------------------------------GSHPNVKGMR
        +ESLLQLV++GW AD  TFKP YLQQLQ L  EK+P+C I                                                   SHPNVKG+R
Subjt:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGI--------------------------------------------------GSHPNVKGMR

Query:  HKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN
        HKP PH D+LSIVFG+D+A  +  +TP DQA  T++H+ D+RL SQ N
Subjt:  HKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]2.1e-1637.14Show/hide
Query:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNC----------------------------GIG--------------------SHPNVKGMRHK
        +E+LL LV++GW  DNGTF+P YLQ L+++LHEKVP C                            G+G                    SHPN K M +K
Subjt:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNC----------------------------GIG--------------------SHPNVKGMRHK

Query:  PLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVR
        P PHYDDLS +FG+D+A+G S + P    Y  + H  +VR
Subjt:  PLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVR

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]4.6e-1636.3Show/hide
Query:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------------------------------------SHPNVKGMRHK
        +E+LL LVD+GW +DNGTF+  YLQ L+R+ HEKV  C +                                                 SHPN KGM +K
Subjt:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------------------------------------SHPNVKGMRHK

Query:  PLPHYDDLSIVFGRDKAIGDSCQTPLDQAYET-NDHVGDVRLGSQD
        P PHYDDLS VFG+ KA+G S + P         +   ++RLGSQD
Subjt:  PLPHYDDLSIVFGRDKAIGDSCQTPLDQAYET-NDHVGDVRLGSQD

XP_038895852.1 uncharacterized protein LOC120084021 [Benincasa hispida]5.2e-2041.48Show/hide
Query:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG-------------------------------------SHPNVKGMRHKPLPHYDDLSIV
        ME+LL LV++GW +DNGTF+P YLQ L+R+LHEKV  C +                                      SHPN KGM +K  PHYDDLS V
Subjt:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG-------------------------------------SHPNVKGMRHKPLPHYDDLSIV

Query:  FGRDKAIGDSCQTPLDQAYET-NDHVGDVRLGSQD
        FG+D+A+G S + P   A     +   D+RLGSQD
Subjt:  FGRDKAIGDSCQTPLDQAYET-NDHVGDVRLGSQD

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.1e-1736.3Show/hide
Query:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------------------------------------SHPNVKGMRHK
        +E+LL LV++GW +DNGTF+P YLQ L+R+LHEKVP C +                                                 SHPN K M +K
Subjt:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------------------------------------SHPNVKGMRHK

Query:  PLPHYDDLSIVFGRDKAIGDSCQTPLDQAYET-NDHVGDVRLGSQD
        P PHYDD S VFG+D+ +G S + P   A     +   ++RLGSQD
Subjt:  PLPHYDDLSIVFGRDKAIGDSCQTPLDQAYET-NDHVGDVRLGSQD

TrEMBL top hitse value%identityAlignment
A0A5A7T5F8 Retrotransposon protein2.7e-1451.25Show/hide
Query:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLD
        +E L++LV   GW +DNGTF P YL QL R++ EK+P C   SHP  KG+ +KP P+YD+L+ VFGRD+A G   +T  D
Subjt:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLD

A0A5A7V4P8 Retrotransposon protein9.3e-1550Show/hide
Query:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLD
        +E L++LV   GW +DNGTF+P Y+ QL R++ EK+P C   SHP  KG+ +KP P+YD+L+ VFGRD+A G   +T  D
Subjt:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLD

A0A5D3BCA9 Retrotransposon protein6.1e-1450Show/hide
Query:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLD
        +E L++LV   GW +DNGTF P YL QL R++ EK+P C   SHP  KG+ +KP P+YD+L+ VFGRD+  G   +T  D
Subjt:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLD

A0A5D3DTF3 Retrotransposon protein3.5e-1444.44Show/hide
Query:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGI---GSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETND
        M+ L++LV   GW +DNGTF+P YL QL  ++ EK+P C +    SH   KG+  KP P+YD+L+ VFGRD+A G   +T  D  +   D
Subjt:  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGI---GSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETND

A0A6P5NGC3 uncharacterized protein LOC110279295 isoform X28.4e-1646.67Show/hide
Query:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQ
        +E L++L  + W  DNGTFK  Y + L+++LHEK+P C + SHPN  G+ +KP PH++ L I FGRD+A G + +
Subjt:  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAA
TTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCT
GTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAA
TTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCT
GTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG
Protein sequenceShow/hide protein sequence
MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN