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Clc01G13540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G13540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHistone H2B
Genome locationClcChr01:26072427..26072777
RNA-Seq ExpressionClc01G13540
SyntenyClc01G13540
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652780.1 hypothetical protein Csa_022685 [Cucumis sativus]8.4e-2581.32Show/hide
Query:  LTMAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        L+MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  LTMAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

VVA34272.1 PREDICTED: histone [Prunus dulcis]4.2e-2469.64Show/hide
Query:  HIIFSLANSILEKSSNSSLNLTMAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVS--DKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEA
        ++ FSL + + EK    SL   MAPKAEKKP     AEEKK+EKA  EKK RAEKKLPK+ S    KKKK++KKSVETYKIYIFKVLKQVHPDIGIS++A
Subjt:  HIIFSLANSILEKSSNSSLNLTMAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVS--DKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEA

Query:  MGIMNSFINDIF
        MGIMNSFINDIF
Subjt:  MGIMNSFINDIF

XP_022937557.1 histone H2B-like [Cucurbita moschata]4.2e-2484.09Show/hide
Query:  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPKAEKKP     AEEKK+EKA  EKK RAEKKLPKD +D KKKKKAKKSVETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

XP_022964641.1 histone H2B.7-like [Cucurbita moschata]1.4e-2483.15Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKKKAKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

XP_038893815.1 histone H2B.7-like [Benincasa hispida]3.2e-2482.02Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

TrEMBL top hitse value%identityAlignment
A0A0A0LV55 Histone H2B1.5e-2482.02Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

A0A5A7SNI2 Histone H2B1.5e-2482.02Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKK+AKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

A0A5E4G3T1 Histone H2B2.0e-2469.64Show/hide
Query:  HIIFSLANSILEKSSNSSLNLTMAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVS--DKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEA
        ++ FSL + + EK    SL   MAPKAEKKP     AEEKK+EKA  EKK RAEKKLPK+ S    KKKK++KKSVETYKIYIFKVLKQVHPDIGIS++A
Subjt:  HIIFSLANSILEKSSNSSLNLTMAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVS--DKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEA

Query:  MGIMNSFINDIF
        MGIMNSFINDIF
Subjt:  MGIMNSFINDIF

A0A6J1HJI6 Histone H2B6.9e-2583.15Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKKKAKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

A0A6J1I594 Histone H2B6.9e-2583.15Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP AEEKK+EKA  EKK RAEKKLPKD SD KKKKKAKKS+ETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

SwissProt top hitse value%identityAlignment
O22582 Histone H2B5.3e-2273.12Show/hide
Query:  MAPKAEKKPT----AEEKK--SEKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPKAEKKP     AEEKK  +EKA  EKK +A KKLPK+    +  KKKK+ KKSVETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPKAEKKPT----AEEKK--SEKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

O65821 Histone H2B.12.8e-2373.86Show/hide
Query:  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPKA KKP      EEKK+E+   EKK +A KKLPKD    KKKKK+KKSVETYKIYIFKVLKQVHPDIGIS+++MGIMNSFINDIF
Subjt:  MAPKAEKKPT----AEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

Q1S9I9 Probable histone H2B.14.0e-2272.34Show/hide
Query:  MAPKAEKKPT----AEEKKS---EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK EKKP     AEEKKS   EKA  EKK +A KKLPK+    + +KKKK++KKSVETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPKAEKKPT----AEEKKS---EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

Q1SU99 Probable histone H2B.34.0e-2276.54Show/hide
Query:  KAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        KAEKKP AE+K +EKA  EKK +AEKK+ K+ S  KKKK+ KKSVETYKIYIFKVLKQVHPDIG+S++AMGIMNSFINDIF
Subjt:  KAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

Q1SWQ1 Probable histone H2B.24.0e-2272.34Show/hide
Query:  MAPKAEKKPT----AEEKKS---EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK EKKP     AEEKKS   EKA  EKK +A KKLPK+    + +KKKK++KKSVETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPKAEKKPT----AEEKKS---EKALVEKKLRAEKKLPKD---VSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein7.1e-2265.96Show/hide
Query:  MAPKAEKK----------PTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAP+AEKK          P  E K +EKA  EKK +A KKLP   +  KKKK++KK+VETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPKAEKK----------PTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

AT2G37470.1 Histone superfamily protein3.2e-2271.76Show/hide
Query:  MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDV-SDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPKA +K  AE+K + KA  EK  +AEKK+ KD    +KKKKK+KKSVETYKIYIFKVLKQVHPD+GIS +AMGIMNSFINDIF
Subjt:  MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDV-SDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

AT3G46030.1 Histone superfamily protein1.4e-2272.83Show/hide
Query:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDV---SDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPK     AEKKP  E+ K+EKA  EKK +A KKLPK+     DKKKK K KKSVETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPK-----AEKKPTAEEKKSEKALVEKKLRAEKKLPKDV---SDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

AT3G53650.1 Histone superfamily protein1.9e-2270.24Show/hide
Query:  MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPKA +K  A +K +EKA  EK  +AEKK+ K+   +KKKKK+KK++ETYKIYIFKVLKQVHPDIGIS +AMGIMNSFINDIF
Subjt:  MAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF

AT5G59910.1 Histone superfamily protein5.4e-2269.07Show/hide
Query:  MAPKAEK----------KPTAEEKKSEKALVEKKLRAEKKLPKDV---SDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF
        MAPKAEK          KP  E+ K+EKA  EKK +A KKLPK+     DKKKK K KKSVETYKIYIFKVLKQVHPDIGIS++AMGIMNSFINDIF
Subjt:  MAPKAEK----------KPTAEEKKSEKALVEKKLRAEKKLPKDV---SDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNSFINDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATCCCCTCAACCCTCATCCTAAAACACATTATTTTCTCACTTGCAAATTCCATCTTAGAGAAATCTTCAAATTCCTCTCTAAACTTAACAATGGCACCAAAGGC
CGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTCTGAGAAGGCTCTAGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTCCCAAAGACGTCTCTGATAAGAAGAAGAAGA
AGAAGGCTAAGAAGAGCGTTGAGACTTACAAGATCTACATCTTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGATTATGAACAGT
TTCATCAACGACATTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATCCCCTCAACCCTCATCCTAAAACACATTATTTTCTCACTTGCAAATTCCATCTTAGAGAAATCTTCAAATTCCTCTCTAAACTTAACAATGGCACCAAAGGC
CGAGAAGAAGCCAACGGCGGAGGAGAAGAAGTCTGAGAAGGCTCTAGTGGAGAAGAAGCTGAGAGCCGAGAAGAAACTTCCCAAAGACGTCTCTGATAAGAAGAAGAAGA
AGAAGGCTAAGAAGAGCGTTGAGACTTACAAGATCTACATCTTCAAGGTGCTCAAGCAAGTCCATCCTGACATTGGAATCTCCAACGAAGCCATGGGGATTATGAACAGT
TTCATCAACGACATTTTTTAA
Protein sequenceShow/hide protein sequence
MSIPSTLILKHIIFSLANSILEKSSNSSLNLTMAPKAEKKPTAEEKKSEKALVEKKLRAEKKLPKDVSDKKKKKKAKKSVETYKIYIFKVLKQVHPDIGISNEAMGIMNS
FINDIF