; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G13640 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G13640
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLEA_2 domain-containing protein
Genome locationClcChr01:26344274..26345597
RNA-Seq ExpressionClc01G13640
SyntenyClc01G13640
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462391.1 PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]3.9e-7369.34Show/hide
Query:  MRSTIATTQGVTSS---SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNP
        MRST    +  +SS   +  +  YRQ+H TT KRT++IRIIGRSLL VI  +++AI+TCWLVVFP+TPRLMVET KVT  GST+  LNATI F IK+ NP
Subjt:  MRSTIATTQGVTSS---SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNP

Query:  NKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST
        NK+AS++MDSMKMIV   MG PF S IPTF LMP+NET+ N  V VN IYPFGRPV SDWI LELRF AK+SYI+NRW SKPRLLEIYCDHLWLKINDST
Subjt:  NKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST

Query:  PNFDNTKCKVDL
        PNFD TKCKVD+
Subjt:  PNFDNTKCKVDL

XP_011648453.2 uncharacterized protein LOC105434468 [Cucumis sativus]8.7e-7368.25Show/hide
Query:  MRSTIATTQGVTSS--SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN
        MRST    +G +SS   A +R + +Q  TT KRT++IRIIGRSLL VI  +++AI+TCWLVVFP+TPRLMVET KVT  GST+  LNATI F IK+ NPN
Subjt:  MRSTIATTQGVTSS--SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN

Query:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP
        K+AS+HMDS+KMIV+  MG PF STIPTF LMP+NE + N  V VNF+YPFGRPV SDW+ LELRF A++SYI+NRW SKPRLLEIYCDHLWL+INDSTP
Subjt:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP

Query:  NFDNTKCKVDL
        NFD TKC+VDL
Subjt:  NFDNTKCKVDL

XP_011654120.1 uncharacterized protein LOC105435303 [Cucumis sativus]2.6e-6160.66Show/hide
Query:  STIATTQGVTSSS----AAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN
        +T  TTQG  SSS    A +R   +QHG  AKRT+VIRIIGRSLL  I L+ +AILTCW VV P+TP+LMVE+G+VT   ST   LNATI F+I++ NPN
Subjt:  STIATTQGVTSSS----AAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN

Query:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP
        KRAS+++DSMKM V   M  PF S IP F + P+N T+L P + VN IYPFGRP+ + WI +EL F AK+SYI NRW SKPRL+EIYC+H W KI+DS P
Subjt:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP

Query:  NFDNTKCKVDL
        NFDN KC+VDL
Subjt:  NFDNTKCKVDL

XP_038895458.1 uncharacterized protein At1g08160-like [Benincasa hispida]9.6e-8074.65Show/hide
Query:  MRSTIATTQGVTSSS--------AAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSI
        MRST  TTQG +SSS        A+ R   ++HG T KRT++IRIIGRSLL VIFLV +AILTCWL+VFPKTPRL VETGKVT  GST+  LNATI F+I
Subjt:  MRSTIATTQGVTSSS--------AAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSI

Query:  KTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLK
        K+ NPNKRASLHMDSMKMIVN  MG+PF S IPTF LMP+NET+L PV+ VNFIYPFGRPV S WI LELRF AKISYI N+WTSKPRLLEIYC+HLWLK
Subjt:  KTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLK

Query:  INDSTPNFDNTKCKVDL
        INDSTPNFDNTKCKVDL
Subjt:  INDSTPNFDNTKCKVDL

XP_038896075.1 uncharacterized protein LOC120084246 [Benincasa hispida]9.0e-6275.16Show/hide
Query:  ILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRP
        +LTCWLVV PKTPRLMVE+GKVT   ST+  LNATI FSIK+ NPNKRAS+HMDSMKMIV  ++G+PF S IPTF LMPQNET+ NP V V+FIYPFGR 
Subjt:  ILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRP

Query:  VPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNFDNTKCKVDL
        V  DWIRLELRF AKISYILN+WTSK RL+EIYC HLW KIN +TPNFD+TKC+VDL
Subjt:  VPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNFDNTKCKVDL

TrEMBL top hitse value%identityAlignment
A0A0A0LSU5 LEA_2 domain-containing protein4.2e-7368.25Show/hide
Query:  MRSTIATTQGVTSS--SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN
        MRST    +G +SS   A +R + +Q  TT KRT++IRIIGRSLL VI  +++AI+TCWLVVFP+TPRLMVET KVT  GST+  LNATI F IK+ NPN
Subjt:  MRSTIATTQGVTSS--SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN

Query:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP
        K+AS+HMDS+KMIV+  MG PF STIPTF LMP+NE + N  V VNF+YPFGRPV SDW+ LELRF A++SYI+NRW SKPRLLEIYCDHLWL+INDSTP
Subjt:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP

Query:  NFDNTKCKVDL
        NFD TKC+VDL
Subjt:  NFDNTKCKVDL

A0A0A0LV68 Uncharacterized protein1.3e-6160.66Show/hide
Query:  STIATTQGVTSSS----AAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN
        +T  TTQG  SSS    A +R   +QHG  AKRT+VIRIIGRSLL  I L+ +AILTCW VV P+TP+LMVE+G+VT   ST   LNATI F+I++ NPN
Subjt:  STIATTQGVTSSS----AAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPN

Query:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP
        KRAS+++DSMKM V   M  PF S IP F + P+N T+L P + VN IYPFGRP+ + WI +EL F AK+SYI NRW SKPRL+EIYC+H W KI+DS P
Subjt:  KRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTP

Query:  NFDNTKCKVDL
        NFDN KC+VDL
Subjt:  NFDNTKCKVDL

A0A1S3CGS4 protein YLS9-like4.7e-5661.24Show/hide
Query:  MRSTIATTQGVTSSSAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKR
        MRST ATT                HG T KRT++IR++GRSLLGVIFLVAL ++ CWLVV PKTPRL+VETGKV    ST ++LNATIAF++K+ NPNKR
Subjt:  MRSTIATTQGVTSSSAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKR

Query:  ASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNF
        AS+HMD M+MIV+ NMG  FSS IP+F L P+N+T+L   V VNF YPFG    ++ I  EL+F A++SY + +W SKPRLLEIYC+HL LKINDST  F
Subjt:  ASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNF

Query:  DNTKCKVDL
        DNTKCKVDL
Subjt:  DNTKCKVDL

A0A1S3CGU2 uncharacterized protein At1g08160-like1.9e-7369.34Show/hide
Query:  MRSTIATTQGVTSS---SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNP
        MRST    +  +SS   +  +  YRQ+H TT KRT++IRIIGRSLL VI  +++AI+TCWLVVFP+TPRLMVET KVT  GST+  LNATI F IK+ NP
Subjt:  MRSTIATTQGVTSS---SAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNP

Query:  NKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST
        NK+AS++MDSMKMIV   MG PF S IPTF LMP+NET+ N  V VN IYPFGRPV SDWI LELRF AK+SYI+NRW SKPRLLEIYCDHLWLKINDST
Subjt:  NKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST

Query:  PNFDNTKCKVDL
        PNFD TKCKVD+
Subjt:  PNFDNTKCKVDL

A0A6J1HJ52 uncharacterized protein At1g08160-like2.1e-5664.06Show/hide
Query:  YRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPF
        Y QQHG TAKRTK++RIIGRSLL V+FLV LAI+ CWLVVFPKTP L++E G VTP   T   LNA+I+F+IK+ NPNKRAS+HMDSMKM ++ +MG+ F
Subjt:  YRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPF

Query:  SSTIPTFILMPQNETILNPVVDVNFIYPFGRP---VPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNFDNTKCKVDL
         +TIPTF   P N+T LNP V+VNFIYPFG+    + SD +  EL F A +SYI+ +W SK R LEIYCD + LKIN STP FDNTKCKVDL
Subjt:  SSTIPTFILMPQNETILNPVVDVNFIYPFGRP---VPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNFDNTKCKVDL

SwissProt top hitse value%identityAlignment
Q8VZ13 Uncharacterized protein At1g081604.0e-0427.32Show/hide
Query:  IIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVT--PTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNE
        I+   LLG+  LV LAIL  +L + PK     VE   V     G+  + +NA  ++ IK+ NP K  S+   SM++    +        I  F   P+NE
Subjt:  IIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVT--PTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNE

Query:  T-ILNPVVDVNFIY------PFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST-PNFDNTKCKVDL
        T I   +V  N                   I +E+   A++SY    + S+ R L+  C  + + +  S+   F    CK  L
Subjt:  T-ILNPVVDVNFIY------PFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST-PNFDNTKCKVDL

Arabidopsis top hitse value%identityAlignment
AT1G08160.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family2.8e-0527.32Show/hide
Query:  IIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVT--PTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNE
        I+   LLG+  LV LAIL  +L + PK     VE   V     G+  + +NA  ++ IK+ NP K  S+   SM++    +        I  F   P+NE
Subjt:  IIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVT--PTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFILMPQNE

Query:  T-ILNPVVDVNFIY------PFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST-PNFDNTKCKVDL
        T I   +V  N                   I +E+   A++SY    + S+ R L+  C  + + +  S+   F    CK  L
Subjt:  T-ILNPVVDVNFIY------PFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDST-PNFDNTKCKVDL

AT3G11660.1 NDR1/HIN1-like 17.0e-0425.2Show/hide
Query:  QQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKV---TPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGK-
        + HG +  R K+IR I  S++ V+F++ L IL  W ++ P  PR +++   V     +G+  N+L +    ++ + NPN +  ++ D + +       + 
Subjt:  QQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKV---TPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGK-

Query:  PFSSTIPTFILMPQNETILNPVV
         F ++IP      ++  I +P V
Subjt:  PFSSTIPTFILMPQNETILNPVV

AT5G22870.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family2.3e-0727.75Show/hide
Query:  KRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTH-NVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFI
        +R  +I  I   +L +IF+ A+  L  WL   PK  R  VE   V     T+ N ++AT  F+I++ NPN R S++  S+++ V          T+  F 
Subjt:  KRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTH-NVLNATIAFSIKTSNPNKRASLHMDSMKMIVNCNMGKPFSSTIPTFI

Query:  LMPQN-----ETILNPVVDVNFIYPFGRPVPSD----WIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPN-FDNTKCKVDL
            N     ET++   V V+     G+ + S      I  E+   A++ + +  W S  R  +I C H+ + +  S PN   N+ C  D+
Subjt:  LMPQN-----ETILNPVVDVNFIYPFGRPVPSD----WIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPN-FDNTKCKVDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGCACTATAGCTACTACACAAGGAGTAACATCATCATCAGCAGCACAAAGATGCTATAGACAACAACATGGGACGACAGCAAAACGCACAAAGGTCATAAGAAT
CATAGGAAGAAGCTTGTTGGGTGTAATATTCCTTGTTGCTCTTGCAATTCTCACATGTTGGCTTGTTGTCTTCCCTAAAACCCCACGTCTCATGGTGGAAACTGGCAAAG
TCACACCCACTGGTTCAACTCATAATGTGCTCAATGCCACCATAGCTTTCTCTATCAAAACCTCCAACCCTAACAAAAGAGCCTCCCTTCATATGGATTCTATGAAGATG
ATAGTCAATTGCAATATGGGCAAGCCGTTTTCCTCCACCATCCCCACCTTCATATTGATGCCCCAAAATGAGACCATCTTGAACCCCGTGGTCGATGTCAACTTCATATA
CCCATTTGGCCGCCCGGTGCCTTCGGACTGGATACGTCTGGAGCTTCGCTTCTTAGCTAAAATCAGCTACATTCTCAACAGATGGACGTCGAAACCTCGGTTGCTCGAGA
TCTATTGCGATCACCTGTGGCTTAAGATCAATGATTCTACACCTAATTTTGATAATACCAAATGCAAAGTGGATCTTTGA
mRNA sequenceShow/hide mRNA sequence
CCCAAAAGAAGTAAAAATTTGGTGAAGAATAATGAGAAGCACTATAGCTACTACACAAGGAGTAACATCATCATCAGCAGCACAAAGATGCTATAGACAACAACATGGGA
CGACAGCAAAACGCACAAAGGTCATAAGAATCATAGGAAGAAGCTTGTTGGGTGTAATATTCCTTGTTGCTCTTGCAATTCTCACATGTTGGCTTGTTGTCTTCCCTAAA
ACCCCACGTCTCATGGTGGAAACTGGCAAAGTCACACCCACTGGTTCAACTCATAATGTGCTCAATGCCACCATAGCTTTCTCTATCAAAACCTCCAACCCTAACAAAAG
AGCCTCCCTTCATATGGATTCTATGAAGATGATAGTCAATTGCAATATGGGCAAGCCGTTTTCCTCCACCATCCCCACCTTCATATTGATGCCCCAAAATGAGACCATCT
TGAACCCCGTGGTCGATGTCAACTTCATATACCCATTTGGCCGCCCGGTGCCTTCGGACTGGATACGTCTGGAGCTTCGCTTCTTAGCTAAAATCAGCTACATTCTCAAC
AGATGGACGTCGAAACCTCGGTTGCTCGAGATCTATTGCGATCACCTGTGGCTTAAGATCAATGATTCTACACCTAATTTTGATAATACCAAATGCAAAGTGGATCTTTG
AGAGATTTGATATGGACTAATGAAGAAGAATGGCATGGAGATTTGAGAGAGGTTGAGAGCAATTTGCTTTGGGGAGAGCTGACAGAAAAAAATGAGGTGAAATTACAGAT
TATATAATCTGTTGTAGTTTGTGAAGAAAAA
Protein sequenceShow/hide protein sequence
MRSTIATTQGVTSSSAAQRCYRQQHGTTAKRTKVIRIIGRSLLGVIFLVALAILTCWLVVFPKTPRLMVETGKVTPTGSTHNVLNATIAFSIKTSNPNKRASLHMDSMKM
IVNCNMGKPFSSTIPTFILMPQNETILNPVVDVNFIYPFGRPVPSDWIRLELRFLAKISYILNRWTSKPRLLEIYCDHLWLKINDSTPNFDNTKCKVDL