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Clc01G13700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G13700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionrecQ-mediated genome instability protein 2
Genome locationClcChr01:26539141..26542584
RNA-Seq ExpressionClc01G13700
SyntenyClc01G13700
Gene Ontology termsGO:0033045 - regulation of sister chromatid segregation (biological process)
GO:0043007 - maintenance of rDNA (biological process)
GO:2000042 - negative regulation of double-strand break repair via homologous recombination (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016607 - nuclear speck (cellular component)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR032245 - RecQ-mediated genome instability protein 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462275.1 PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]6.4e-5572.22Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTGTV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I   
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
                                 +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
XP_022152884.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]3.7e-5571.6Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTGTV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII   
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
                                  VHKIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
XP_022964663.1 uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata]2.1e-5875.46Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA  
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
                                  VHKIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
XP_022970350.1 uncharacterized protein LOC111469342 [Cucurbita maxima]9.5e-5975.46Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA  
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
                                  VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
XP_038894076.1 uncharacterized protein LOC120082820 [Benincasa hispida]1.9e-5976.07Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALKLLCRQLKDARQ+P+NNAATLGGILFQRAWLQG LVSVDK+N KLILDDGTGTV+LSLSRDFRLRPW LGMYVMVVGAFV RTNEPP+IA  
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
                                  VHKIVDLSKFP REAMWYLEV+EAYKMFYEPLIEEFS
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
TrEMBL top hitse value%identityAlignment
A0A1S3CGI5 recQ-mediated genome instability protein 23.1e-5572.22Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTGTV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I   
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
                                 +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
A0A5A7UD07 RecQ-mediated genome instability protein 23.1e-5572.22Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTGTV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I   
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
                                 +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
A0A6J1DF83 recQ-mediated genome instability protein 2 isoform X11.8e-5571.6Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTGTV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII   
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
                                  VHKIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF
A0A6J1HLJ4 uncharacterized protein LOC111464675 isoform X11.0e-5875.46Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA  
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
                                  VHKIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
A0A6J1I0C8 uncharacterized protein LOC1114693424.6e-5975.46Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL
        MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTGTV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA  
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYL

Query:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
                                  VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Subjt:  LIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G08390.1 unknown protein5.4e-4454.55Show/hide
Query:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGK--LILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIA
        MDYSLAA+K+LC QL+DA+ TPS NAA+LGG+LFQRAWLQG+LV      G   L+LDDGTG ++L L+ DF LR W  GMYVMVVG + VRT + P++ 
Subjt:  MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGK--LILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIA

Query:  YLLIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
                                    VHK+VDLS  P REAMWYLEVM+AY++FYEPLI+EFS
Subjt:  YLLIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGC
CTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCC
CTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTC
TTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGT
CATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAA
mRNA sequenceShow/hide mRNA sequence
GTCGGCTCACAATCATTCGTAGTAGTTAATTCTTAGGATCACGATAATACATAATAATGGTCCCGAAAGACCACAGTCAGACATAGTGTAGTGAACCCGTCTAACTCACA
ATTATATATAGTAGTGAACTCGTTTGACCCAGAGTGATTCATAGTAAGTGTTAAAATTAGTTTACATAAAAGTTTAGCGGCGTTGCAGCTTAGCGCCAAAACAAGGGAAG
TGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTC
TCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGAC
TTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGTATTTACTAATTTGGGTTGATCA
TGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGT
GGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAACTTGTTTTGTTGACTCAACAGATGTGGAGAAATCCTTTGGATTGG
ACCAAAAATGTAGAAATTCTTGGTGGGGAAATTTGGGGGCAATTGCACACATCACAAAACTTGTAAAGATTTTCAGATTGTAGATGGTTTTTGGATACCACATACTTATT
TTTGGGAATCCTATACCTATCCCTAATAATATTTTGGAAGATTTGTCCATGAATTTTGTTTTGGTCCTCTTCCTAGGAGTCAAAGAGGTAATTGTTATTGGGACGGGTGT
CCTAAATCAGTTAGAGTTTTCGTAGTTTGTAATTTTTTTGTACATACAAATTATTTATTCAACAAATAACGAGTTATTTTA
Protein sequenceShow/hide protein sequence
MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAF
LNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS