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Clc01G13810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G13810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGibberellin-regulated protein 2
Genome locationClcChr01:26678079..26680267
RNA-Seq ExpressionClc01G13810
SyntenyClc01G13810
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055209.1 snakin-2-like isoform X1 [Cucumis melo var. makuwa]1.2e-3689.16Show/hide
Query:  EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        +EMEYDE +VMRG NRRLMQ I+CGGECKRRCGAHSRPNRCIRACGTCC RC+CVPPGTSGNREMCGTCYT MTTHGNKTKCP
Subjt:  EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

KGN64291.1 hypothetical protein Csa_013222 [Cucumis sativus]1.1e-4885.22Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPRE-EEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGT
        MAVR F LLLLLGVFVFLCLSQVSSNGY  E  +EMEYDEK+MRG NRRLMQ I+CGG+C+RRCGAHSRPNRCIRACGTCC RC+CVPPGTSGNREMCGT
Subjt:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPRE-EEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGT

Query:  CYTGMTTHGNKTKCP
        CYT MTTHGN+TKCP
Subjt:  CYTGMTTHGNKTKCP

XP_008438094.1 PREDICTED: snakin-2-like isoform X1 [Cucumis melo]2.4e-4578.57Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLS--------QVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPP
        MAVR F LLLLLGVFVFLCLS        Q+SS+GY  +E   +EMEYDE +VMRG NRRLMQ I+CGGECKRRCGAHSRPNRCIRACGTCC RC+CVPP
Subjt:  MAVRNF-LLLLLGVFVFLCLS--------QVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPP

Query:  GTSGNREMCGTCYTGMTTHGNKTKCP
        GTSGNREMCGTCYT MTTHGNKTKCP
Subjt:  GTSGNREMCGTCYTGMTTHGNKTKCP

XP_008438104.1 PREDICTED: snakin-2-like isoform X2 [Cucumis melo]1.5e-4783.9Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREM
        MAVR F LLLLLGVFVFLCLSQ+SS+GY  +E   +EMEYDE +VMRG NRRLMQ I+CGGECKRRCGAHSRPNRCIRACGTCC RC+CVPPGTSGNREM
Subjt:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREM

Query:  CGTCYTGMTTHGNKTKCP
        CGTCYT MTTHGNKTKCP
Subjt:  CGTCYTGMTTHGNKTKCP

XP_038895055.1 snakin-2-like [Benincasa hispida]2.1e-4988.7Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPRE-EEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGT
        MAVRNF LLLLLG+FV L LSQVSS+GYP E   EMEYDEKVMRGTNRRLMQNINCG ECKRRCGAHSRPNRCIRACGTCC+RCKCVP GTSGNREMCGT
Subjt:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPRE-EEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGT

Query:  CYTGMTTHGNKTKCP
        CYT MTTHGNKTKCP
Subjt:  CYTGMTTHGNKTKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LW79 Uncharacterized protein5.1e-4985.22Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPRE-EEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGT
        MAVR F LLLLLGVFVFLCLSQVSSNGY  E  +EMEYDEK+MRG NRRLMQ I+CGG+C+RRCGAHSRPNRCIRACGTCC RC+CVPPGTSGNREMCGT
Subjt:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPRE-EEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGT

Query:  CYTGMTTHGNKTKCP
        CYT MTTHGN+TKCP
Subjt:  CYTGMTTHGNKTKCP

A0A1S3AVJ9 snakin-2-like isoform X27.4e-4883.9Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREM
        MAVR F LLLLLGVFVFLCLSQ+SS+GY  +E   +EMEYDE +VMRG NRRLMQ I+CGGECKRRCGAHSRPNRCIRACGTCC RC+CVPPGTSGNREM
Subjt:  MAVRNF-LLLLLGVFVFLCLSQVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREM

Query:  CGTCYTGMTTHGNKTKCP
        CGTCYT MTTHGNKTKCP
Subjt:  CGTCYTGMTTHGNKTKCP

A0A1S3AW57 snakin-2-like isoform X11.2e-4578.57Show/hide
Query:  MAVRNF-LLLLLGVFVFLCLS--------QVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPP
        MAVR F LLLLLGVFVFLCLS        Q+SS+GY  +E   +EMEYDE +VMRG NRRLMQ I+CGGECKRRCGAHSRPNRCIRACGTCC RC+CVPP
Subjt:  MAVRNF-LLLLLGVFVFLCLS--------QVSSNGYPREE---EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPP

Query:  GTSGNREMCGTCYTGMTTHGNKTKCP
        GTSGNREMCGTCYT MTTHGNKTKCP
Subjt:  GTSGNREMCGTCYTGMTTHGNKTKCP

A0A5A7UP17 Snakin-2-like isoform X15.9e-3789.16Show/hide
Query:  EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        +EMEYDE +VMRG NRRLMQ I+CGGECKRRCGAHSRPNRCIRACGTCC RC+CVPPGTSGNREMCGTCYT MTTHGNKTKCP
Subjt:  EEMEYDE-KVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

A0A6J1CAF9 snakin-2-like8.5e-3670.8Show/hide
Query:  MAVRNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCY
        MAV  F LLLLGV VFLCLS+V   G      ++E   + +RG NRRLM+ I+CGG CKRRCGAHSRP  CIRACGTCCARC+CVPPGTSGNRE+CG CY
Subjt:  MAVRNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCY

Query:  TGMTTHGNKTKCP
        TGMTTH NKTKCP
Subjt:  TGMTTHGNKTKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 111.4e-1661.29Show/hide
Query:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        I+C   C+ RC   SRPN C RACGTCCARC CV PGTSGN + C  CY  +TTHG + KCP
Subjt:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

P46687 Gibberellin-regulated protein 36.5e-1742.73Show/hide
Query:  RNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGM
        R+ L+LLL   +  CL+    + +  E+ ++   E V++         I+CGG CK RC   SRPN C+RAC +CC RC CVPPGT+GN  +C  CY  +
Subjt:  RNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGM

Query:  TTHGNKTKCP
        TT G + KCP
Subjt:  TTHGNKTKCP

P46688 Gibberellin-regulated protein 26.5e-1759.68Show/hide
Query:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        I+CGG CK RC   SR   C+RAC +CC+RC CVPPGTSGN  +C  CY  +TTHG + KCP
Subjt:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

Q93X17 Snakin-23.1e-1967.19Show/hide
Query:  QNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        + I+CGG C  RC   SRP  C RACGTCCARC CVPPGTSGN E C  CY  +TTHGNK KCP
Subjt:  QNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

Q9LFR3 Gibberellin-regulated protein 145.9e-1864.52Show/hide
Query:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        I+C   C  RCG HSR N C+RAC TCC RCKCVPPGT GN+E CG+CY  M T G K+KCP
Subjt:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

Arabidopsis top hitse value%identityAlignment
AT1G22690.1 Gibberellin-regulated family protein2.3e-1743.33Show/hide
Query:  MAVRNFLLLLLGVFVFLCLSQV-----SSNGYPREEEEMEYDEKVMRGTNRRL--MQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNR
        M   N +  +  +  FL LSQV     SS+           DE       R       INCG  C RRC   SR   C RACG+CCA+C+CVPPGTSGN 
Subjt:  MAVRNFLLLLLGVFVFLCLSQV-----SSNGYPREEEEMEYDEKVMRGTNRRL--MQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNR

Query:  EMCGTCYTGMTTHGNKTKCP
          C  CY  + THGNK KCP
Subjt:  EMCGTCYTGMTTHGNKTKCP

AT2G18420.1 Gibberellin-regulated family protein1.0e-1761.29Show/hide
Query:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        I+C   C+ RC   SRPN C RACGTCCARC CV PGTSGN + C  CY  +TTHG + KCP
Subjt:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

AT4G09600.1 GAST1 protein homolog 34.6e-1842.73Show/hide
Query:  RNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGM
        R+ L+LLL   +  CL+    + +  E+ ++   E V++         I+CGG CK RC   SRPN C+RAC +CC RC CVPPGT+GN  +C  CY  +
Subjt:  RNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGM

Query:  TTHGNKTKCP
        TT G + KCP
Subjt:  TTHGNKTKCP

AT4G09610.1 GAST1 protein homolog 24.6e-1859.68Show/hide
Query:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        I+CGG CK RC   SR   C+RAC +CC+RC CVPPGTSGN  +C  CY  +TTHG + KCP
Subjt:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

AT5G14920.1 Gibberellin-regulated family protein4.2e-1964.52Show/hide
Query:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        I+C   C  RCG HSR N C+RAC TCC RCKCVPPGT GN+E CG+CY  M T G K+KCP
Subjt:  INCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTTHGNKTKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTCGTAATTTCCTCCTCCTTCTTCTTGGGGTTTTCGTCTTCCTCTGCCTTTCACAGGTGTCTTCTAACGGATACCCAAGAGAAGAAGAAGAGATGGAA
TATGATGAGAAAGTGATGAGAGGGACAAACAGAAGGCTAATGCAAAACATAAATTGTGGAGGGGAATGCAAGCGGCGGTGTGGGGCGCACTCGAGGCCGAACCGG
TGCATAAGAGCGTGCGGGACCTGCTGCGCACGGTGCAAATGTGTGCCGCCAGGAACCTCCGGCAACCGTGAAATGTGCGGCACCTGCTACACCGGCATGACCACA
CATGGCAACAAAACCAAGTGCCCTTAG
mRNA sequenceShow/hide mRNA sequence
TTCCACTCTCTTGAAATTTACTCCACAAATTATGTCTATTTTTAGAAATTTACGTTAGTCTCTTCTCTTTATATCAATGAGTTTCTATGAATGGATTCTCGAATA
TATGAAAGAAAGGCATGGCGGTTCGTAATTTCCTCCTCCTTCTTCTTGGGGTTTTCGTCTTCCTCTGCCTTTCACAGGTGTCTTCTAACGGATACCCAAGAGAAG
AAGAAGAGATGGAATATGATGAGAAAGTGATGAGAGGGACAAACAGAAGGCTAATGCAAAACATAAATTGTGGAGGGGAATGCAAGCGGCGGTGTGGGGCGCACT
CGAGGCCGAACCGGTGCATAAGAGCGTGCGGGACCTGCTGCGCACGGTGCAAATGTGTGCCGCCAGGAACCTCCGGCAACCGTGAAATGTGCGGCACCTGCTACA
CCGGCATGACCACACATGGCAACAAAACCAAGTGCCCTTAGTTAACTTCCGATTCGGGTGCATCTTGATTATATCTATCTTTTTGCACTTTATTCCGTTGCTCAA
TTATAGTTTGTGACGTATTTTCTTAAATAATTTTGACTTTTCTTTATCGTTTTTGTAGTGGGTTGCAAAAAGATAATAGAGTCCAATTTGAATTTAATTTTTGTT
TTATATTTTCATATTGCTATGTTTCCATTTAGGTAATGAACTTTTCCAACTACATCTTCATATCAAAGTTTTATGATTAATTAGTAGGCTCTCGTAAATCTC
Protein sequenceShow/hide protein sequence
MAVRNFLLLLLGVFVFLCLSQVSSNGYPREEEEMEYDEKVMRGTNRRLMQNINCGGECKRRCGAHSRPNRCIRACGTCCARCKCVPPGTSGNREMCGTCYTGMTT
HGNKTKCP