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Clc01G14230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G14230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein PXR1
Genome locationClcChr01:27056984..27058254
RNA-Seq ExpressionClc01G14230
SyntenyClc01G14230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584261.1 hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1368.32Show/hide
Query:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAP
        MG TSEEK E  VEK K++KKDKEKH EEE+DD+  K+K         ++K+KK+K+PAD KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAE NA 
Subjt:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAP

Query:  P
        P
Subjt:  P

KAG7019857.1 hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1266.02Show/hide
Query:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDD-----------DEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHN
        MG TSEEK E  VEK K++KKDKEKH EEE++           D+ K+E ++K+KK+K+PAD KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAE N
Subjt:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDD-----------DEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHN

Query:  APP
        A P
Subjt:  APP

XP_008437610.1 PREDICTED: protein PXR1 [Cucumis melo]2.5e-1980.85Show/hide
Query:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS
        MGETSEEK E  V  EKKEKKDKEKHGE ED      E+K+KKKKEK PADKKDP+KLRQKLEKLEAKMQALAVKKEEILKLLHEAE N PPPS
Subjt:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS

XP_022137487.1 nucleolar protein 58 [Momordica charantia]2.3e-1270.59Show/hide
Query:  MGETSEEKQ--ESTVEKEKKEKKDKEKHGE-EEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPP
        MGE SEEK   E   +KEKKEKKDKEKH E E  + EKKKEKKEKKK  K P DKKDP+KLRQKLEKLE KM+ LA+KKEE+LKLL EAE NA    PPP
Subjt:  MGETSEEKQ--ESTVEKEKKEKKDKEKHGE-EEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPP

Query:  SS
        SS
Subjt:  SS

XP_022923831.1 protein PXR1 [Cucurbita moschata]6.0e-1369.31Show/hide
Query:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAP
        MG TSEEK E  VEK K++KKDKEKH EEEDD  KKK K         ++K+KK+K+PAD KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAE NA 
Subjt:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAP

Query:  P
        P
Subjt:  P

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ8 Uncharacterized protein1.9e-2083.33Show/hide
Query:  MGETSEEKQESTVE-KEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS
        MGETSEEK E  VE KEKKEKKDKEKHGEE +D+EKKK    KKKKEK+PADKKDP+KLRQKLEKLE KMQALAVKKEEILKLLHEAE N PPPSS
Subjt:  MGETSEEKQESTVE-KEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS

A0A1S3AV24 protein PXR11.2e-1980.85Show/hide
Query:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS
        MGETSEEK E  V  EKKEKKDKEKHGE ED      E+K+KKKKEK PADKKDP+KLRQKLEKLEAKMQALAVKKEEILKLLHEAE N PPPS
Subjt:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS

A0A6J1C8D9 nucleolar protein 581.1e-1270.59Show/hide
Query:  MGETSEEKQ--ESTVEKEKKEKKDKEKHGE-EEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPP
        MGE SEEK   E   +KEKKEKKDKEKH E E  + EKKKEKKEKKK  K P DKKDP+KLRQKLEKLE KM+ LA+KKEE+LKLL EAE NA    PPP
Subjt:  MGETSEEKQ--ESTVEKEKKEKKDKEKHGE-EEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPP

Query:  SS
        SS
Subjt:  SS

A0A6J1E7S6 protein PXR12.9e-1369.31Show/hide
Query:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAP
        MG TSEEK E  VEK K++KKDKEKH EEEDD  KKK K         ++K+KK+K+PAD KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAE NA 
Subjt:  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAP

Query:  P
        P
Subjt:  P

A0A6J1K499 protein PXR14.2e-1265.38Show/hide
Query:  MGETSEEKQESTVEKEKK------EKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHN---AP
        MG  SEEK E  VEK++K      ++K KEK G+++D + K+ EKKE  KK K+PADKKDP+KLRQKLEKLE KMQALAVKKEE+LKLLHEAE N   AP
Subjt:  MGETSEEKQESTVEKEKK------EKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHN---AP

Query:  PPSS
        PPSS
Subjt:  PPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G62750.1 unknown protein1.9e-0951Show/hide
Query:  EKQESTVEKEKKEKKDKEKH--GEEEDDDEKKKEKKEKK-KKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEH--------NAPPPSS
        EK+E   +K+KK+K + +K+  GEE +D EKK +KK+KK KKEK P DKKDP KL+ KL+K+E K+QA+ +KK+EI+KL+H+AE         +APPP++
Subjt:  EKQESTVEKEKKEKKDKEKH--GEEEDDDEKKKEKKEKK-KKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEH--------NAPPPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTACGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAG
AAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAA
GCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAGTGTTTGATTATTTTGTTTAACCTGGTGATGAAGAAATTAGGGCCACAAGAAAAATGAGACGACCAAGTGGTGTGGCTGAATTGTTGGGAATCCACAACAAT
TTTTGGGCATTGGGTTGCCATATTTATGGAGGTCAGTTGTAGACCCAATAATTACACAACAATATTACTCATTCTCTTTGCCTTCAATTTTGCTGTCTAACACTA
ACTAACTATTTGATTAAATAATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTACGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAG
AAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGA
AGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAAACCCTTT
AATTTCTTTCTACCTTCTTCTTTTTAATGGAAGATTTTCCATTAAAAACAGTGATAATAAAATGGCTTTCAACTTCATCCTCTCCTCCCATTCAAGACATCTGTT
TAGGGTTACAATTAGTTTCAAACTTTGAATCTTCTTAAACTATTTCAATATATATATTTGTTATTTTCATTCAAATCATGCTTCATTTTGTTTACTTTCAACATA
TTCGTTTTTGGTTCATTTAAATAATCTTATGCTAATGGAGATGTCATCCGTCTCTCAATTTTTTATCATATAGCTAATGTG
Protein sequenceShow/hide protein sequence
MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS