; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc01G14320 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc01G14320
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBHLH domain-containing protein
Genome locationClcChr01:27150802..27151256
RNA-Seq ExpressionClc01G14320
SyntenyClc01G14320
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3385.86Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]1.1e-3385.86Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]2.2e-3486.87Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+GVRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]1.1e-3385.86Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]1.4e-3384.85Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ +RISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein5.3e-3485.86Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like1.1e-3486.87Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+GVRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like1.7e-3286.32Show/hide
Query:  SRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        SRSRQS+GVRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  SRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like5.3e-3485.86Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like4.5e-3384.85Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        MSG SRSRQS+ VRISDEQITDLVHKLQQLLPEIR+RHSDKV           AKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI72.4e-2365.66Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MS RSRSR S+  RI+DEQI DLV KLQ LLPE R R +D+V           A+VLQETC+YIRSLHREVDDLSERL+ELLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI61.7e-2469.39Show/hide
Query:  SGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS   RI+DEQI+DLV KLQ LLPE R R +D+V           ++VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI61.7e-2469.39Show/hide
Query:  SGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        S RSRSRQS   RI+DEQI+DLV KLQ LLPE R R +D+V           ++VLQETCNYIRSLH+EVDDLSERLSELLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE62.8e-2466.34Show/hide
Query:  MSGR--SRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSL
        MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+R R SDKV           +KVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSL
Subjt:  MSGR--SRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSL

Query:  L
        L
Subjt:  L

Q9CA64 Transcription factor PRE31.4e-2671.57Show/hide
Query:  MSG-RSRSRQSNGV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLL
        MSG RSRSRQS+G  RIS++QI DL+ KLQQLLPE+R  R SDKV           A+VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLL
Subjt:  MSG-RSRSRQSNGV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLL

Query:  TQ
        TQ
Subjt:  TQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.0e-2566.34Show/hide
Query:  MSGR--SRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSL
        MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+R R SDKV           +KVLQETCNYIR+LHREVDDLS+RLSELLA++D  +A+AAIIRSL
Subjt:  MSGR--SRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSD--TAQAAIIRSL

Query:  L
        L
Subjt:  L

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 19.6e-2871.57Show/hide
Query:  MSG-RSRSRQSNGV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLL
        MSG RSRSRQS+G  RIS++QI DL+ KLQQLLPE+R  R SDKV           A+VLQ+TCNYIR+LHREVDDLSERLSELLA SDTAQAA+IRSLL
Subjt:  MSG-RSRSRQSNGV-RISDEQITDLVHKLQQLLPEIR-HRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLL

Query:  TQ
        TQ
Subjt:  TQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.3e-1957Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEI-RHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL
        MS R   + SN  RISD+Q+ DLV KL+Q LPEI   R SDKV           +KVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLL
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEI-RHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELL--ATSDTAQAAIIRSLL

AT3G47710.1 BANQUO 34.3e-2056.57Show/hide
Query:  SGRSRSRQSNGVRISDEQITDLVHKLQQLLPEI-RHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ
        S +SRSRQ+    I+DEQI DLV +L +LLPE+  +R S KV           ++VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSNGVRISDEQITDLVHKLQQLLPEI-RHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-1855Show/hide
Query:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEI-RHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLL
        MS R   + S+  RISD Q+ DLV KL+Q+LPEI + R SDK            +KVLQETCNYIR+L+REVD+LSERLS+LL +   D+ +AA+IRSLL
Subjt:  MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEI-RHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGCAGATCTCGTTCAAGGCAATCAAATGGTGTAAGAATCAGCGACGAACAAATCACTGATCTTGTTCACAAGTTGCAGCAGCTCTTGCCTGAGATTCGCCATCG
CCACTCCGACAAGGTCTGTTTTTTGGATGGAGGAAAAGAGATTTTACCAGCGAAGGTTTTGCAAGAGACATGCAATTACATTCGAAGTCTACATAGAGAAGTAGATGATT
TAAGTGAGAGACTTTCGGAATTGTTGGCCACATCCGACACAGCCCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGCAGATCTCGTTCAAGGCAATCAAATGGTGTAAGAATCAGCGACGAACAAATCACTGATCTTGTTCACAAGTTGCAGCAGCTCTTGCCTGAGATTCGCCATCG
CCACTCCGACAAGGTCTGTTTTTTGGATGGAGGAAAAGAGATTTTACCAGCGAAGGTTTTGCAAGAGACATGCAATTACATTCGAAGTCTACATAGAGAAGTAGATGATT
TAAGTGAGAGACTTTCGGAATTGTTGGCCACATCCGACACAGCCCAAGCCGCCATTATTAGAAGCTTGCTCACTCAGTGA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSNGVRISDEQITDLVHKLQQLLPEIRHRHSDKVCFLDGGKEILPAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ